KEGG   Amaranthus tricolor (tampala): 130806396
Entry
130806396         CDS       T09367                                 
Name
(RefSeq) protein RAE1-like
  KO
K14298  mRNA export factor
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    130806396
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130806396
   03036 Chromosome and associated proteins [BR:atri03036]
    130806396
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     130806396
Chromosome and associated proteins [BR:atri03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    130806396
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 Beta-prop_EML_2 WDR55 WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 EIF3I Beta-prop_TEP1_C Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_LRRK2 Vitelline_membr RES
Other DBs
NCBI-GeneID: 130806396
NCBI-ProteinID: XP_057527439
LinkDB
Position
2:complement(33957286..33966720)
AA seq 350 aa
MSAFGSGTASTTSHNPNKSVEVVSPPGDSVSSLCFSPKANFLVATSWDNQVRCWEITKNG
MTTSSVPKASISHDQPALCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK
EVAWIPEMNLLVTGSWDKTLKYWDTRQSNPVHTQQLPDRCYALAVLHPLLVVGTADRNLV
VFNLQNPQIEFKRITSPLKYQTRCVATFPDKQGFLVGSIEGRVGVHHLDDSQQSKNFTFK
CHRDGNDIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSAFNN
DGSIYAYSVSYDWSKGAENHNPSTAKPSILLHLTQDSEVKAKPRTNSGRR
NT seq 1053 nt   +upstreamnt  +downstreamnt
atgtctgcatttggatccggaactgcttctacaaccagtcacaaccctaacaaatcagtc
gaggtggttagtcctccgggagattccgtttcaagtctttgttttagccctaaagccaat
ttccttgttgctacatcttgggataaccaggtaagatgttgggaaataacaaagaatggt
atgactaccagcagtgttcccaaagcgtcaatttcacatgatcagccggccttatgttca
acttggaaagatgatggaaccacagtcttttctggaggatgtgataaacaagtcaaaatg
tggccgttgttgtctggtggccaaccagtgactgtagctatgcatgacgcacctataaag
gaagttgcgtggattcctgagatgaatcttttggttacaggaagctgggacaagactttg
aagtattgggatactagacagtcaaacccagtacacacgcaacaactcccagatcgttgc
tatgctcttgctgtgttgcatccactactggttgtgggaacggcagacagaaacctagtt
gtcttcaatttgcagaatccacagatagagttcaagaggatcacttcacccctaaaatat
cagacaagatgtgttgctacctttcctgataaacaaggcttcttggttggctcaattgaa
ggaagggttggtgtacaccatcttgatgattcccaacagagcaagaactttactttcaaa
tgccacagggatggaaatgacatatactctgtcaattctttaaacttccaccctgtgcat
catacatttgcgacagctggatctgatggcgcttttaacttttgggataaggatagtaaa
caacgactcaaggctatgtcaaggtgcaatcagccgataccttgcagtgctttcaataat
gatggctcaatctacgcttattcggtgagttacgactggagtaaaggtgctgagaaccat
aatccatcaactgccaaaccttctattctactgcacttaacccaggattccgaggttaaa
gctaagccgcgaacgaacagtggtaggcgatga

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