KEGG   Amaranthus tricolor (tampala): 130806710
Entry
130806710         CDS       T09367                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03013  Nucleocytoplasmic transport
atri04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    130806710
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    130806710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130806710
   04131 Membrane trafficking [BR:atri04131]
    130806710
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     130806710
Membrane trafficking [BR:atri04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    130806710
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    130806710
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    130806710
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_WDHD1_1st Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_WDR19_1st WD40_Gbeta EIF3I Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_ELP1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 WD40_RFWD3 Beta-prop_SCAP Beta-prop_WDR41
Other DBs
NCBI-GeneID: 130806710
NCBI-ProteinID: XP_057527881
LinkDB
Position
2:35811930..35813968
AA seq 301 aa
MGIQKIETGHQDTIHDFQMDYYGKRIATASSDHTIKIIGVSNNSHQHLATLSGHQGPVWQ
VAWAHPKFGSILASCSYDGKVVIWKEGNQNEWAQANIFDDHKSSVNSIAWAPHEVGLCLA
SGSSDGNIMVYTMRSDGGWDSITIDQAHPVGVTSVSWAPATAPGALVAAGVQDPVQRLCS
GGCDNTVKIWKPNNGSWRMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGKVIIW
TVAREGDQWEGKVLNDFKTPVWRVSWSLTGNILAVADGNNNVTLWTEAVDGDWQMVTTVD
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atggggatacagaagattgagacaggtcaccaggacacaatccatgatttccaaatggac
tactatggaaaacgaatagccactgcatcgtctgaccatacaattaagattattggggtg
agcaacaactcccaccagcatcttgctacactgagtggtcatcaaggccctgtttggcag
gttgcttgggcacatcctaaatttgggtcgatccttgcttcttgttcctatgatggaaag
gttgttatatggaaagaaggtaatcagaatgagtgggcacaagcaaatatttttgatgat
cacaaatcttcggtcaattcaattgcttgggcgccacatgaggttggcctttgtcttgct
agtggatcatcagatggaaatatcatggtttatactatgaggtctgatggtggatgggat
tcgataacgatagatcaagcccacccggttggggtaacctccgtttcttgggcacctgcc
actgctcctggtgctcttgtagctgctggtgtacaggatcctgttcagaggctttgctca
gggggttgtgacaacacggtgaagatttggaaacccaataatgggtcatggaggatggat
tgcttcccagctctccaaatgcatactgattgggttcgagatgttgcttgggcaccaaat
ttggggctcccaaaatcaaccattgcaagtgcttcacaagacggcaaggtgatcatttgg
accgttgcaagggaaggtgatcagtgggaaggcaaggtgttgaatgattttaaaacccca
gtttggagggtatcgtggtccttaacaggcaacattttggctgttgcagatggtaataac
aatgtgacattgtggactgaagctgttgatggagattggcaaatggtaactacagttgat
tcttga

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