Amaranthus tricolor (tampala): 130806781
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Entry
130806781 CDS
T09367
Name
(RefSeq) single-strand DNA endonuclease 1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130806781
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130806781
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
Chromo_2
Motif
Other DBs
NCBI-GeneID:
130806781
NCBI-ProteinID:
XP_057527965
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Position
2:2487452..2496864
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AA seq
680 aa
AA seq
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MGVKNLWDILDSCKKTLPLHHLQNKRVCIDLSCWMVQLQSVNRNHCATKEKVYLRGLFHR
LRALISLNCSVIFVADGAIPAIKICTYRRRLNSLNEVTKDDVERQKVTSLRRNMGSEFSG
VIKEAKILGLALGIPCLDGIEEAEAQCALLNLESICDGCFSFDSDIFLFGARTVYREICL
EKGGYVVCYEMSDIEKKLGLGRHSLVALSLLLGSDYSHGVRGFGPESACQIVKSISEDVL
LERIKSDGISFLTSLKTSKKHGWLPDRCGKENFDPQVKELGYQLPFQKDSEVVKVIEAYM
NPKCHSVDSDPVYRVLAVHHFQRAKLQEICSKFFEWPPEKTDEYILPRIAERELRRFANL
RLSSSRLGATIPLHMMPVKCPISEVLKQRRVQGRESLEVSWQDFDGLKSSVVPADLVERA
CPEKIVEFEERKAQLKIQKRCKPKAKRSDDTASMANVDTKLQNLLLDIESEDSAKHENCK
PNKSEDVAPISNDDSRPVNPLFDAECEPNTGHKPTSCAYSSALRSNIDIDLTIPDTSDQE
YDSNINSKPTVTYHITSMSRPERLLLDINFVDDLRDKPASCSGSSAPGNSIEIDLTVSEP
NSNNKLIFDFPSYLPTNIETDVIDLSSPSPLPSTRYVSKCPGNNGGQINVIDLSDSDMEI
SPEHDRKARELRVFLASIRK
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgaaaaatttatgggatatcttggattcctgcaagaaaactcttcctcttcat
catcttcagaacaagagggtgtgcatagacctctcatgttggatggtgcaactccagagt
gtgaatagaaatcattgtgcaacaaaagagaaggtttaccttaggggtctcttccatcga
ttgagggctcttatatccttgaattgcagtgtaatttttgtagccgatggagctatccca
gctatcaaaatttgtacttacagaaggcgcttgaattcattaaatgaggttacaaaagat
gatgtagaaagacaaaaggttacttccttaagaagaaatatgggttctgaattttctggt
gtgatcaaagaggctaaaatcctgggcttggcgcttggtattccttgtttagatgggatt
gaggaagccgaagcacaatgcgcgctattgaacttggaatcaatttgtgatggatgtttc
tcttttgattcagacatattcctttttggtgcaagaactgtgtatcgagaaatatgcctt
gaaaaagggggttatgttgtttgctatgaaatgagtgacatagagaaaaaacttggactt
ggaaggcattcattggttgctctatcccttcttttaggaagtgattattctcatggagtt
cgcgggtttggacctgaatccgcttgccaaattgttaaatcaattagtgaagatgttctt
cttgaacgtataaaatcagatggtatatctttcttaacatcattgaaaacctcaaagaag
catggatggttgccagatcgatgtgggaaagagaactttgatcctcaagtaaaggaatta
ggatatcagcttcctttccaaaaagattctgaagttgttaaggtaatcgaagcgtacatg
aatccaaagtgtcattcagtggattcggaccctgtgtatagggttcttgcggtgcaccat
ttccagcgtgctaagcttcaggagatatgctctaaattttttgaatggcctcctgagaaa
acagatgaatatatccttcctagaattgctgaaagagagctgcgaagatttgctaatttg
cgtttgtcttcttcacggttgggagctacaattcctttgcacatgatgccagtaaaatgt
ccaatatctgaagttctcaagcaaagaagagttcaaggtagagaaagtttagaagtttct
tggcaagacttcgatggcctcaaatcttccgtagtacccgctgatctagtagaacgtgcc
tgtcccgagaagattgtagaattcgaggaaaggaaagctcagttaaagattcaaaaacgt
tgcaaacccaaggcaaagagatcggacgacacagcctccatggctaacgttgatacgaaa
ctccaaaacctgttacttgacatcgagtctgaggactccgcgaaacacgaaaactgtaaa
ccaaacaaatctgaagacgtagctcccatttccaacgatgattcaagaccggtaaaccca
ttatttgatgctgagtgtgagcctaacacaggacacaaaccaacgtcatgtgcttactcg
tctgcattacgaagcaacatcgatatagacttgaccattcccgacacatctgatcaagaa
tacgacagcaacattaacagcaaaccgactgtcacttaccacataacttccatgtcaaga
cccgaaaggctgttgcttgacatcaactttgtcgatgatctaagagacaagccggcttca
tgctctggctcatctgcaccaggaaacagcattgaaattgaccttacagtttctgaaccc
aacagtaataacaaacttatatttgattttccttcatatcttcctactaatattgaaact
gatgtgatcgatctctcgagcccttctccattaccgagcacacgctatgtctcgaaatgt
ccaggtaacaacgggggccaaataaatgttatcgatttaagtgactcggacatggaaatt
tcacctgaacatgatcgaaaagctcgagagcttagagtgttcctggccagcatcagaaaa
taa
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