Amaranthus tricolor (tampala): 130807543
Help
Entry
130807543 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130807543 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130807543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130807543
Spliceosome [BR:
atri03041
]
Complex C
Other components
Step II factors
130807543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
130807543
NCBI-ProteinID:
XP_057528776
LinkDB
All DBs
Position
3:36297617..36302603
Genome browser
AA seq
591 aa
AA seq
DB search
MDLLKNYTDMAEDDDEEPQSHQSDNDNEESEQETSIISLPSKSAAPKVDDTALSLLSATS
TTAISTKPLDPTQHLVSYNPTFDQLWAPIYGPAHPYAKDGLAQGLRNHKLGFVENAAIDS
FVFDEQYNTFHKYGYAADPSASAVNNYVGDFDALEKNKGVSVYNIPQSEQKRRRIEKKKE
KEEEEEEDTNVNAEEVSNPASEVWLKKNKISPWSGKKEVVQGELTEEQKKYAEEYAKKKA
EEKGEKVETGEFFADKTTFHGKEEKDYQGKSWISPPKDVKASNDHCYIPKRCVHTWSGHT
RGVSAIRFFPKYGHLILSAGMDTKIKIWDVFGSGKCMRTYMGHSKAVRDVCFSNDGTKFL
SAGYDKNIKYWDTETGQVISTFSTGKVPYVVKFNPDDDKQNVLLAGMSDKKIVQWDINSG
EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS
VHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG
EGKMWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggatctcctcaaaaactacacggacatggcggaagacgacgatgaagaaccccaatct
caccaatccgacaacgacaatgaagaatctgaacaagaaacttcaattatctcacttcca
tcgaaatcagcagcaccaaaagtagacgatacagcactttctcttctctctgcaacctca
acaaccgccatatccaccaaacctttagacccaactcaacatttagtttcctacaatccc
accttcgaccaactctgggcacccatttatggcccagctcatccttacgctaaagacggg
ttagcgcaaggtttacgaaatcataaattagggtttgttgaaaacgcggccattgattcg
tttgtgttcgatgaacaatataatacgtttcacaaatatgggtatgctgcagatccttct
gcttctgcggttaataattacgtgggtgattttgatgcgcttgagaaaaataagggggtt
tctgtgtataatattcctcaaagtgagcagaaacgacgtagaatagagaagaagaaggaa
aaggaggaggaagaggaagaggatacaaatgttaatgcagaagaagtgagtaatcctgct
agtgaagtttggttgaagaagaataagattagtccttggtctgggaagaaggaagttgtg
cagggtgaattgactgaagaacagaagaagtatgctgaagaatatgctaagaaaaaagct
gaagaaaaaggggagaaagttgagacaggagaattttttgctgataaaactactttccat
gggaaggaagaaaaggattatcaaggaaagtcatggatttcccctcctaaagatgtcaaa
gcttctaatgatcattgttatattccgaaacgatgtgttcatacttggagtggtcataca
agaggagtttccgctattagatttttcccgaagtatgggcatttgattctttcagctggg
atggatactaagattaagatatgggatgttttcggttcagggaaatgtatgagaacttat
atggggcattcgaaggctgttcgtgatgtatgtttttcgaatgatgggactaagttttta
agtgcaggttatgataagaatatcaagtattgggatactgagacgggtcaggtaatctcc
acattttctactggtaaagttccttatgttgttaagtttaaccctgatgatgataaacaa
aatgtgttattagctggtatgagtgataagaagattgtgcaatgggatataaatagtggt
gagattacacaagagtatgatcaacatttaggagcagtaaatacaattacttttgttgat
aataataggaggtttgttacttcgagtgatgacaagagtttgagagtttgggagtttggt
atacctgttgttatcaagtatattagtgaacctcatatgcattcaatgccgtctatttct
gtgcatcctaatactaattggttggctgctcaaagtttggataatcagattttgatttat
agcacaagggagaggtttcagcttaataagaagaaaaggtttgcagggcatattgttgct
gggtatgcttgccaagttaatttttcgcctgatggtcgttttgttatgtccggagatggc
gagggtaaaatgtggttttgggattggaaaacttgtaaggtttttagaacattgaaatgt
catgagggggtttgtattggttgtgaatggcaccccttggagcaaagtaaggtggctact
tgtggctgggatggactgatcaaatattgggactaa
DBGET
integrated database retrieval system
