Amaranthus tricolor (tampala): 130808567
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Entry
130808567 CDS
T09367
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
130808567
Enzymes [BR:
atri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
130808567
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
130808567
NCBI-ProteinID:
XP_057530008
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Position
3:34185890..34195700
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AA seq
679 aa
AA seq
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MENRNITKWKDIMKIIFFIQLMFAGDCSGRNPMGGGSIPNMPPDSGTDSAAPVLVNVTAN
QIVLDNGIIQVTFSIPEGFIIGIRFGGIDNVLDVTNRLSDRGYWDIASVSNPDNDDTNEI
GLGGRSYKIISQTPDQAEISFFCQRTSSLPLQVEIRYVLLRGRSGFYSYAIFERAEGLPP
LDVDQIRTVFKLQTTLFTYMAISDKIQRIMPTLRDRETGQRLAYKEAVRITKPTNSKIKG
QVDDKYQYSCEDKDNKLHGWISFKPAVGIWLITPSDEFRMGGPLKQDLTSHVGPTMISMF
HSTHYGGNDLIMRFKNGEPWKKVFGPYLVHLNSAHGKADPVVLWQQAKEQMQTEVKNWPY
EFPLSPDFPKANQRGSVVGRLFVNNGSKVPTPANFGWVGLAAPGEPGSWQYEMKGYQFWI
QTDSEGRFLIPNVRVGIYNFFAWVPGFIGDYKSAAAVNIVAGKQINIGDQVFIPPRSGPT
LWEIGFPDRSAAEYFVPDPTPHFTNPVFVNDAENKYRQYGLWDRYTDLYPRHDLVYTVGV
SDFRKHWFFAHVLRRIGKTYQPTTWRIVFPLLTIAPNTTYTLQIALASATQSELQVRINN
PDVQSKPLFTTLLIGRDNAIARHGIHGLYRLYTIGVPSSLLKRGHNTVFLTQSRNNEMFR
GIMYDYVCLEGPPSSQIML
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcgaaatatcacaaaatggaaggatataatgaaaatcatattttttatccag
ttgatgtttgcaggagattgtagtggcagaaatccgatgggagggggaagtataccaaat
atgccgccggactctggtactgatagtgctgctcctgtactggtcaatgttactgctaat
cagattgtgttggacaatggcataattcaagtgactttctccattccagaaggtttcatt
attggaatacgattcggtggcatagacaatgtactagatgtcactaatcgcctatctgat
agagggtactgggacatagcatcagtcagtaatccagacaatgatgatacaaatgaaatt
gggcttggagggagaagttataaaatcataagccaaactccagatcaagcagagatttca
tttttctgtcaaagaacttcatcacttccgctacaagttgaaatcagatatgtattgctg
cgtggacggtcaggattctactcttatgccatttttgaacgtgcagaaggtttgccacct
ttggatgtggatcagatcaggactgtttttaagcttcaaactacattgtttacttatatg
gcaatttcagataaaatacaaagaattatgccaaccttgcgtgatcgagagactggtcag
cgattggcctataaagaagctgttcgaataacaaaacccactaattctaagattaaagga
caggttgatgacaagtaccaatattcatgtgaagataaagataacaagttacatggatgg
atttcctttaaacctgcagtaggaatttggcttataacaccaagtgatgaattccgaatg
gggggacctcttaaacaagaccttacatctcatgttggaccaacgatgatttctatgttt
cacagtacacattatggtggtaatgacttaataatgagattcaaaaatggagaaccatgg
aaaaaggtttttggaccatacttggttcatttgaattcggctcatgggaaagcagatcct
gttgtattatggcaacaagcgaaagaacagatgcagacagaagttaagaactggccttat
gagttcccattatccccagatttccctaaggctaatcaacgcggatcagttgtgggtaga
ttgtttgtcaataatgggtcaaaagtaccaacacccgcaaattttggttgggttggcttg
gctgcacctggtgaaccaggttcatggcaatacgaaatgaaaggctatcaattctggatt
cagactgatagtgaaggaaggtttctgataccgaatgttcgtgttggcatctacaatttc
tttgcatgggttccaggatttattggagactacaaatctgctgcagctgttaacattgta
gcagggaagcaaataaacattggtgatcaagtttttatacctccaagaagtgggccgaca
ctctgggaaattggattccctgatcgcagtgcagctgaatactttgtgcctgaccctact
ccacacttcaccaaccctgtgtttgtcaacgatgctgaaaacaagtacagacaatatggt
ctatgggatcgttacactgatctatacccgagacatgaccttgtttacacagttggtgtc
agtgattttcggaagcattggtttttcgctcatgtgcttagaaggataggaaaaacttat
cagcccacaacatggcggattgttttccctttactgaccattgcaccaaatactacgtac
actttacaaatcgcgcttgcatctgcaacacaatctgaactacaagtgagaattaacaat
cctgatgtgcaaagtaagcctttgttcacaacattgcttataggtcgggataacgcaatc
gcaagacatgggattcatggactgtatcgcttgtataccataggtgtaccgtcttctttg
cttaaacgtggacataatacagttttcctcacacaatccagaaataatgaaatgtttcgt
ggtatcatgtatgattatgtatgtttagaagggcctccatcttctcagataatgttgtaa
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