Amaranthus tricolor (tampala): 130809129
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Entry
130809129 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130809129
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130809129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130809129
03041 Spliceosome [BR:
atri03041
]
130809129
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130809129
Spliceosome [BR:
atri03041
]
Complex B
Other components
Prp19-related factors
130809129
Complex C
130809129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
130809129
NCBI-ProteinID:
XP_057530754
LinkDB
All DBs
Position
3:complement(33675537..33683698)
Genome browser
AA seq
908 aa
AA seq
DB search
MSIPCELYPSEEDLLYEEEILRNPFSLRLWWRYLIARTASPFKKRAIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTQQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRRYLKYDSSHIEDFIEFL
IDSERWQEAAERLAGVLNDDQFFSIKQKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLPEKARDVFEEGMMTVVTVRDFSVIFDAYSQFEESML
AYKMENMDLSDEEGENVGEDDEDDEEDIRGDVELSAGKFEKRILKNFWLHDDNDVDLRLA
RLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYETHKDLGNARVIFDKAVQVNYKAVDHLASIWCEWAEMELRHKNFKGA
LELMRRATAEPSVEVKRRVAADGHEPVQMKLHKSLKLWTFYVDLEESLGNLDSTRDVYER
ILDLRIATPQIIINYAMLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KTKLERARELFENAVEKAPGDCVKPLYLQYAKLEEDYGLAKRAMNVYDQATKAVPASEKL
SMYEIYIARAAEMFGVPKTRNIYEEAIQSGLPDKDVKTMCMKYAELEKSLGEIDRARAIY
SYASQFSDPRTYPDFWNQWHEFEVQHGNEDTFREMLRIKRSVAASYSQTHFILPEYAMQK
DEKQSLDKTVGEDEMAALERKLAPADNGDSVKDKARMVGFVSAGHESQGNESARNVNQEE
IELPDESDNEEDEEDEKVEIAQKDVPSAVFGGLAKKRDEPEKLEDGEEAKTADAHLGALE
RLKRRKKD
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtccataccttgcgaattatacccttcagaagaagatcttctctacgaagaagaaatt
ctcagaaaccctttcagtcttcgtctttggtggcgttaccttatcgccagaactgcatct
cccttcaaaaaaagagcaatcatctacgaaagagcactcaaagctttacctggtagctac
aaactttggtatgcttatcttcgtgaacgtcttgaacttgttcgtaatcttcctattaca
cattctcaatatgaaaccctaaataatacttttgaacgtgctttagttactatgcataaa
atgcctagaatttggattatgtatttacaaaccctaactcagcagaaattagttactcgt
actcgtagaactttcgatcgtgctctttgtgctttgcctgtcacgcagcatgatcgaatt
tgggaaccctatttgatttttgttagtcaaaaggggattcctattgagacttcacttagg
gtttataggaggtatttgaagtatgattcctcacatattgaggattttattgagtttttg
attgattctgagaggtggcaggaagctgctgagagattagctggggttttgaatgatgat
cagttttttagtattaaacagaagactaaacatcgtctttggcttgagttgtgtgattta
ttgactaagcatgctactgaggtgtctggattgaatgtggatgctataattaggggtgga
attagaaagtttacagatgaggtgggtcggctgtggacgtctttggcggattattatatt
aggaggaagttgcctgagaaggctagggatgtgtttgaagaaggcatgatgacggttgtg
accgttagagattttagtgttatttttgatgcatactcgcagtttgaggagagtatgttg
gcgtataagatggaaaatatggatttaagtgatgaggagggagagaatgttggagaggat
gacgaggatgatgaggaggatattaggggggatgttgagctttctgcggggaagtttgag
aagaggattttaaagaatttttggttgcatgatgataatgatgtggatttgcggctggct
agattggagcatttgatggacagacgacccgagcttgctaatagtgtgcttcttcgccaa
aatccacacaatgtggagcaatggcatcggagggtaaagctctttgaaggaaacccaact
aggcagatattgacttatactgaggcagtgagaactgtggatccaatgaaggcagtagga
aaacctcacacattgtgggtagcttttgctaagctttatgaaactcataaagatcttggt
aatgctagggtaatttttgacaaagctgtgcaagtgaattataaggcagttgatcatctt
gctagcatttggtgtgaatgggctgagatggaattgaggcacaagaactttaaaggagca
ctggaactgatgcgacgtgccacggcagagccttccgttgaagtgaagcgtcgagttgct
gctgatggtcacgagcctgttcagatgaaattgcacaaatcattgaaattgtggacattc
tatgtagatttagaggaaagccttggtaatttagattccacccgtgatgtgtatgagaga
atattggatctaagaattgcaactcctcaaattattataaactatgcaatgcttctagag
gagcataaatactttgaagatgcttttagggtttatgaaagaggtgtgaagatctttaaa
tatcctcatgtgaaggatatatgggtaacatatttatccaagtttgtgaagaggtatggg
aagactaaactggaacgagcaagagaactttttgaaaatgccgttgaaaaggctcctggg
gactgtgtaaagcctctgtacctgcaatatgctaagttggaggaggactatggcttagcg
aagcgtgcaatgaatgtttatgaccaagctactaaagctgttcctgcaagtgagaagctg
agcatgtacgagatttatatagctcgtgcagctgaaatgtttggtgtgccaaaaaccagg
aatatatatgaggaagcaattcaatctggtcttcctgacaaagatgtgaagaccatgtgt
atgaagtatgctgaacttgagaagagccttggggagattgatcgtgctcgtgcaatttac
tcatatgcttcccagttctcagatccgagaacttatcctgatttctggaatcaatggcat
gaatttgaggtccaacatggaaatgaagacactttcagagaaatgctccgcataaaaaga
agtgttgctgccagttacagccagactcatttcatacttcctgaatatgcgatgcaaaaa
gatgaaaaacaaagccttgataagactgttggtgaagatgaaatggcagcccttgagagg
aagttggctcctgcagataatggcgattcagtcaaggacaaagctaggatggttggtttc
gtcagtgctgggcatgaatctcaaggcaatgaatctgcaagaaatgtaaatcaggaggag
atcgagctgccggatgagagtgacaatgaggaagatgaggaagatgaaaaggttgaaatt
gctcaaaaggatgtgccaagtgctgtttttggcggcttggctaaaaagcgggacgagcct
gagaaattagaagatggggaggaggctaaaacagctgatgctcatcttggtgcccttgaa
agattgaaacgaagaaagaaagactaa
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