Amaranthus tricolor (tampala): 130809641
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Entry
130809641 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130809641 isoform X1
KO
K24155
rabconnectin-3a
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
130809641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atri04131
]
130809641
Membrane trafficking [BR:
atri04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
130809641
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
130809641
RAVE complex
130809641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
WD40_WDHD1_1st
WD40
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EML
ANAPC4_WD40
EIF3I
Beta-prop_IFT140_1st
Beta-prop_IP5PC_F
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
130809641
NCBI-ProteinID:
XP_057531362
LinkDB
All DBs
Position
4:complement(2233965..2251488)
Genome browser
AA seq
2531 aa
AA seq
DB search
MVETTPSMTDLIDNLPLHLIKSETIPPSPNVFESGSSAIDWLPDFAGYSWIGYGASSLLV
ISHFPSPLSPQQSHIGPIFRQVFELSDSFDVSSVVWSPENPSSGEITASAHNRIFLFQYD
CTPGCFCWSQTALLVQSAKIEAVAWTGSADGIISVGLEVVLWKRKVKSWEIAWKFSLNVP
QTLVSSTWSLEGPLATGVYSTKLHAKGLATMPCNSSDHLSVFQYDGKSGYIASELRHPQP
VLAMQWRPCGGRQLKDALYAPRHFLLTSCLDGAARLWCEVDASRIRKGNKENRDKSTHRQ
SFCVVAVIELNQSLGGILGKDIFIEWALEADGIVSAGGVLNEVLTAERNQNDDVGSCEWL
IGVGPSQLLTFWSVHCLDDIATMRSPRVTLWKRYEVTKPDLKISCRSNSLSCFEESCYKK
GSIWRNQLFGPPVICSLIQFFPCNSLICSVLYNQSMQKAEGKSSHVCEMDNKLSCQSGGF
LDTLGHSGKILQVTVHPYMHEVELAVSLDSNGLLIFWSIHTNSYSLSCLPTLTPSWRVKG
KFLLQETVSQDMILYWAPSWLEDHQVLLIGHTQGIDCFIVKTSVPEEDYIQCHKLCTIPF
VRHDHLEGPDKILSVPLHSTSKKDSNCDHFLLFGVWMKNCLVESWKLTLHSCELSENGHR
YSADPRNNNGFSTCIYKTDFAGKTYSIAVSPSSSFLLDDHDEITSVSMVSPSISMHSHKL
LNDCYSCGSLYHMATGHSDGRSRLWRFNLSESSVDHTPFELVGVFSSLEGPVNAISVSDW
GQRIATICPDGLENNVNMLFIWEPLHLTGVGTLELEDKICLHGKVMAFNWFQMENILFFG
VCFRNELHIYSRRIYNIHASSDLEKPQGASTWVCIGVVHTSSTICDFVLGPRGTLIVIHE
NFFTLFSHWSFFTVKKHLNDQHLNTDTTSYLKNEMDCGIPAFSVGKVLICEEMSLEKSSE
DAFCPPLTKAYRDVSFRIKDGAQQIAFAPNKDSVVSMTQIAEKLGGPLPFYHPEALLTNI
YSGNWKRAYAAVCHLFDCLTLNDTVDQRANPPKSSITIGQIKLSKYFEGQLSKGRDDQGI
QWNNDLDTNTWSQHSVRGLMHFADTYVSNAVNSASAASTTSFEPHRLHELLEKLHPNHAV
TDLQKMQMLAIIDLLNEISNSQSTSAYESLDDPGRRFWCAIRLQQLDFQRRYSRTPSVAE
LVVDSRLMVWAFHSDCQASLFTSILPTEPKWEDMRKLGVGFWLTNLTDLRSKMEKLARSQ
YLKNKDPKACALLYIALNRLQVLAGLFKISKDEKDKPLVAFLSRNFQEERHRAAALKNAY
VLMGRHQYELAIGFFLLGGDIISAITVCAKTFGDDQLALVICRLFEGQGGASERHLISKI
LLPSAIEKGDYWLASVLEWVLGNYLQSFLIVLGLQGDITASESENSFKHAAFLDPSIGQF
CEMLATKNSLRNAAGERNTAILCGWATVMIASAFNKCGLPLEALEYLSSSVSILGVLDQR
PNCGDSETLPTVLHPSPNHSSRWLSHEVACHLAYQVKLDLAMQHAIKLFKECPCWINNSL
GLTKAGAGVTSSVEDEISQFGSYHRNFEQLLDSDLAYLEQKFSVARDTLLDKIMFTLDNG
KLLLHGYHVFTSQVHLPSTSHCDYLSSWLFKNFVKASDYLSFSLPRFVISSVIASTQMLA
SSKRSLSAAKAYCGFSFLEFYMQGLMLSISSLKGFLMMQWNDSYRHLIRQYISALDICNY
CMLFASSMLQCNHKALDAMLQQMSSADKNNGETDIVSLRIILGHVVEALCLETRNLDGFL
GSREFHQENGGDTMYITNITTEDEKWIILRFCLWHHLSKFVEIKLNQLSSKLPCDPVANT
ATLDSSLSSDVDGVSSLKNIIQVLTIFIETIRNTFTNLLPHLARQVAIFLRQKVEDGTSE
SILVWLEEFHQSTPGMLHEHLDRSSSTLEVLEIGNSCSELLAQIYNCPRIVNEMLAHISV
KMPELIHGKVCKRWNQLRFSMPKGLEKLESYKQEGIFDGSPRYNKSKSPSAGSEQNHNLM
GSDKKEPAFTKKVVPFNNPKEIYRRTGELLEAFCINSIEPQHAVLASNKKGISYFSWGDG
LPFSDPSDYIWAQADWPQDGWACMESTPAPICNSPSLSFGSDKSTQLGLDGATVGAGYRS
KIGRDLTGGGAFGIPGYAGIGATGMGWGMDEFDKFVDPPATLSNVTGSALAAHPSRPLFL
VGSSNTHIYLWEFGEEKAIATYGVLAAANVPPPYPLASVSGLQFDRCGHRFASSALDGTV
SAWQLEVGGRSNVRPTESSRCFSGQVLDVCYVGTSGSIIAASGYSSNGVNVVIWDTLAPP
SSSRASVMCHEGSACSIAVFDNDVGTGSISPLIVTGGKGGDVGLHDFRYIATGKSKRRHS
NAVERMADSDAIDMRSELSSTVGDQNRHGMLWYIPKAHSGSVTKISTIPNTSFFLTGSKD
GDVKLWDAKNASLVFHWPRLHERHTFLQRNSQSFGGVSRVGVTDIQVISDGFLTCGGDGL
VKMVQLNSLRE
NT seq
7596 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaaccactccttccatgaccgatctaattgacaaccttcctctacatttgatc
aaatcagaaacaattccaccatccccaaatgtttttgaatctggatcttccgccattgat
tggttgcctgactttgccggttattcatggataggttatggagcttcttctcttcttgta
atttctcactttccttctcctttatctcctcagcagtctcacatcggtcctattttccgt
caagtttttgaactttccgattcattcgacgttagttctgtcgtttggtcgccagaaaat
ccttcttcgggagaaatcactgcatcagctcataatcgtatttttctctttcagtatgac
tgtactccaggttgtttttgttggagtcagactgctttacttgtgcaatctgccaagatt
gaggctgttgcatggacgggctctgcagatgggataatttcggtagggcttgaagtagtt
ttatggaaaagaaaagttaaatcttgggaaatagcttggaagttcagtctgaacgtccct
caaactctggtttcttcaacttggtcacttgaaggtcctttagcaacgggtgtatattcc
acaaaattacatgcaaaagggttagctactatgccctgcaattcaagtgaccatcttagt
gtatttcagtatgacggtaaatctggatacattgcttctgaattacggcatcctcaacct
gttttggcgatgcagtggagaccttgtggaggacgccaactaaaagatgctctatatgca
ccaaggcatttcctgctcactagctgcttagatggggctgccaggttgtggtgtgaggtt
gatgctagtagaattcggaaaggaaacaaggagaaccgtgacaagtcaacccataggcaa
tctttttgtgtggttgctgtcatagaacttaatcaatcattgggtggtattctcggaaaa
gatatttttatagagtgggcactagaagcagacggcatagtatctgcaggaggtgtcctt
aatgaagtgctcactgccgagagaaaccaaaatgatgatgttggcagttgtgaatggttg
attggggttggtccgagccaactgcttacgttctggtctgttcattgccttgatgacatt
gctacgatgcggtctccacgggttacattatggaagagatatgaagtgacaaaacctgat
ctgaaaatctcttgtagaagcaatagtttaagttgttttgaagaatcttgttacaagaaa
ggttctatatggaggaatcaactctttggtccaccagtcatatgctcgttaattcagttt
tttccttgtaattccttgatctgctcagtgttatataatcagtcaatgcagaaggcggag
gggaaatcttctcatgtatgtgaaatggataacaaattgtcttgtcagtctggaggattc
ttggatactcttggtcactctggtaaaattttacaagttactgttcatccatacatgcat
gaagttgaacttgctgtttccttagattccaatgggttacttatattttggtctattcac
accaattcttatagcctttcttgtcttccaactttaaccccttcgtggcgagtgaaaggg
aagtttttactacaggagactgtatcacaagatatgattttgtattgggcaccatcatgg
ctggaagatcaccaggttcttctcattggacacactcaaggaatagattgctttattgta
aaaaccagcgtacctgaagaagactatatccaatgccataagctttgcactattcctttc
gtcaggcatgatcatttagaagggcctgacaagattctttcagttcccttacattccact
tctaaaaaagattcaaattgcgatcatttcttgctttttggggtatggatgaagaattgt
ttggttgaatcatggaaattgaccttgcattcctgtgagctatctgaaaatggtcatagg
tactccgctgaccctagaaataataatggcttcagcacatgcatttataaaactgacttt
gccggaaaaacatatagcattgctgtaagtccatcctcatcatttttgttagatgatcat
gatgaaattacaagtgtctccatggtatcaccaagcatatcaatgcattctcacaagttg
ttaaatgattgctattcatgtggttctctatatcacatggccacagggcactccgatgga
aggtcaaggctatggagatttaacctatctgaatcttcagtagatcacactccttttgag
ctagttggtgtttttagttcccttgaaggacctgttaatgcaatctctgtttctgattgg
ggtcagaggattgcaacgatatgtccagatggtcttgaaaataatgtgaacatgcttttt
atatgggagccactgcatctaacaggagttgggactctggaactggaagacaagatatgc
ctgcatggtaaagttatggctttcaactggtttcaaatggaaaatattttgttttttggg
gtctgtttccggaatgagctgcatatatattcacgaaggatatataacattcatgcttca
tcggatttggaaaagccccagggagcatccacttgggtctgcattggtgtggtgcatact
tcgtctactatttgtgactttgttttagggcctaggggcacacttattgtcattcatgaa
aacttctttactctctttagccattggtcattctttactgttaagaagcatctgaatgat
cagcacttgaacacagatactacgtcatatttgaagaatgagatggattgtggtattcct
gcattctctgtgggtaaagttctgatttgtgaagagatgtcattagagaagagtagtgag
gatgctttctgccctcctttgacaaaggcatatcgtgatgtaagctttcggatcaaagat
ggtgctcaacaaattgcttttgcaccaaacaaggattccgttgtgagcatgacacagata
gctgaaaaattgggtggtcccttacctttctatcaccctgaggcgctcttgacgaatata
tattcaggcaactggaaacgtgcatatgcagctgtttgtcatctttttgactgcctgacc
ttaaatgatacggtcgaccaaagagcaaaccctccaaaatctagtatcactattgggcag
atcaaattgtcgaagtattttgagggacagctatcaaagggaagagatgatcaaggaatt
cagtggaacaatgatcttgacacaaacacttggtctcaacattcagtacgagggctgatg
cattttgctgatacttatgtgagtaatgctgtcaactccgcgtctgctgcatctaccaca
agctttgagccacatagattgcatgaattgctagagaagttgcatcccaatcatgctgtc
acagatttgcagaagatgcagatgcttgcaattatagaccttctgaatgaaattagtaat
tcacaatctacctctgcatatgagagtcttgatgatccaggtagaaggttttggtgtgca
ataaggctacagcaattggattttcaaaggagatacagtagaactccatcagttgcggaa
ttagttgttgactctaggctgatggtttgggcattccattctgattgtcaagcaagcttg
tttacttcaattctcccaactgaaccaaaatgggaagatatgcggaagttgggagttggc
ttttggttgacaaatcttactgacctacgcagtaagatggagaaactggcaagatctcag
tatttaaaaaataaagatccaaaggcgtgtgcgcttctatacatagcattaaatagactt
caagtcttggctggattattcaagatcagtaaggatgagaaggacaagcctctggttgca
tttttatctcgcaattttcaggaggagcgacatcgagctgctgctttgaaaaatgcttat
gtattgatggggaggcatcagtatgagttggcaatcggatttttcctgcttggaggtgat
attatttctgctatcactgtctgtgcaaagacttttggagatgaccaacttgctcttgta
atttgtcgcctctttgaggggcagggtggagcatcagaacgccacctaatatcaaaaatt
ttacttccatctgctattgagaaaggcgactactggctagcaagtgttctagagtgggta
ttgggtaattaccttcaatcatttttgattgttctcggtttgcaaggggacattactgcc
tcggagtctgaaaactcatttaaacatgccgcttttcttgaccctagtattggtcagttt
tgcgaaatgttagcaactaaaaatagcttgagaaatgcagctggagagagaaatactgcc
attttgtgtggctgggctactgtgatgattgcttctgctttcaacaaatgtggccttcct
cttgaagctctggagtatctctcatcatctgtgagcattcttggagttctagatcagaga
ccaaattgcggagattcagaaactctacccacagtactgcatccttctccgaatcattct
tcgagatggctgtcacatgaggtggcttgtcatttggcataccaagttaaactagattta
gcaatgcagcatgccatcaaattattcaaagaatgtccttgctggatcaacaatagcttg
gggttaaccaaagctggtgctggtgtcacaagctctgtggaggatgagataagtcaattt
ggttcttatcatagaaattttgagcagctgttggattctgatcttgcatatctggagcag
aagttttctgtggctcgagataccctgcttgataagattatgtttactttagacaacgga
aaattgttgctccatggctatcatgttttcacttctcaagttcatttgccttccacaagc
cattgtgactatttgtcatcttggttgtttaagaattttgtaaaagccagcgactatttg
tccttttcacttccaagatttgtgatttctagtgttatagcaagtacccagatgctggct
tcatccaagcgaagtttatcagctgccaaagcatattgcggcttcagttttttggagttt
tacatgcagggtttgatgctatccatctccagtctaaaaggttttttaatgatgcaatgg
aatgatagttatagacaccttattagacagtatatttctgctcttgatatctgcaattat
tgtatgttattcgcttcatcaatgcttcagtgtaatcataaagctcttgatgcaatgcta
caacaaatgtcttccgctgacaaaaataatggagaaactgatattgtaagtttacgtata
atccttggacatgtagtcgaggcactatgcctcgaaacacggaaccttgatggtttcctg
ggttctcgagaatttcatcaggaaaatggaggggacacaatgtacatcacaaacatcaca
acagaagatgagaaatggattattcttaggttttgtttgtggcatcatttatcaaaattt
gttgaaatcaagctgaatcaactatccagtaaactaccttgtgatcccgtggctaataca
gctactttagattctagtttatcttctgacgttgatggtgtttcttctctcaaaaatatt
atacaagtcttaacaatcttcattgaaacaattagaaacacctttacaaatttactgcct
catcttgcaaggcaagttgcaattttccttaggcagaaggtggaagatggtacgtctgag
tctattctagtgtggttggaggaatttcatcaatctactcctggtatgcttcatgagcat
ctggacagaagctctagtactttagaagttttggaaataggaaattcatgctcagagtta
ctagcacaaatttacaattgtcctagaattgtcaatgaaatgcttgcccatatttcagtt
aagatgccagagctcattcatgggaaggtttgtaaaaggtggaaccaattacgtttttct
atgcccaaagggcttgagaaactggaaagttataaacaagaaggtatttttgatggaagt
cctcggtataataaaagtaaaagcccttccgcaggttctgaacagaatcataaccttatg
ggctcggataaaaaggaaccagctttcacaaagaaggtggttcccttcaacaatccaaaa
gaaatttataggagaactggagaattgttggaggcattctgtattaattccatagaacca
cagcatgctgtacttgccagcaacaaaaagggaataagctactttagttggggtgatgga
ttacctttcagtgatccatcagattatatctgggcacaagctgattggccacaggatggt
tgggcttgtatggagtctactccagctcctatttgtaattctcctagtttaagctttgga
agtgataaaagtacacagcttggattggatggagctacggttggtgctggttatcgatca
aaaattggaagggatttgactgggggtggcgcatttgggatccctggttatgctggcatt
ggtgccactggaatgggctggggaatggatgaatttgataaatttgttgatccacccgcg
acattgagtaatgtaactggaagtgctttggctgctcatccttcaaggcctctctttcta
gttggttctagtaacactcacatttacctatgggagtttggtgaagagaaagctattgca
acttatggagtactggctgctgctaatgtgcctcctccatatcctcttgcatctgttagt
ggtttgcagtttgatcgatgtggacatagatttgctagcagtgcattggatggaactgta
tctgcctggcaactggaggtaggaggaaggagcaatgtcagaccaacagagtcatctcgt
tgcttcagtggccaagtgttggacgtatgttatgtgggaaccagtgggtctattatagct
gcttctggttatagttcaaatggtgttaatgtggttatatgggatacactagctccccca
tcaagctccagagcgtctgtgatgtgccatgaaggtagtgcctgctccattgctgtgttt
gataatgatgtcggaacgggttctatttctcccctaattgttactggtggaaaaggtggt
gacgttggacttcatgattttaggtatatagctacaggaaagagtaagagaaggcattca
aatgctgttgagaggatggcggattcagatgctattgatatgcgatctgaactctcttca
actgtgggagatcaaaatcgacatggaatgctgtggtatataccaaaggctcactcaggg
agcgtcaccaagatttcaacgataccaaatacaagctttttcttgactggaagcaaggat
ggagatgttaaactttgggatgctaagaatgctagcttagtctttcattggccaagatta
catgagagacatacctttctccagcgtaattcccaaagtttcggaggagtctctagggtt
ggtgtcacagatattcaagttatttcggatggttttcttacttgcggaggagatggttta
gtaaaaatggtccagctgaacagtttgcgtgaatag
DBGET
integrated database retrieval system
