Amaranthus tricolor (tampala): 130809721
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Entry
130809721 CDS
T09367
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130809721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130809721
03036 Chromosome and associated proteins [BR:
atri03036
]
130809721
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130809721
Coactivators
SAGA/TFTC/STAGA complex
130809721
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130809721
STAGA complex
130809721
TFTC complex
130809721
SAGA complex
130809721
SLIK complex
130809721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
LisH
Beta-prop_DCAF12
LisH_PAC1
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
130809721
NCBI-ProteinID:
XP_057531482
LinkDB
All DBs
Position
4:complement(8532071..8543275)
Genome browser
AA seq
675 aa
AA seq
DB search
MDEEEIERAVIAYLKKKGFKQTELAFQEEHQLQQHPQQQSKNLSSNSQTDADVAKLILSF
TIESERLPAQYHDGYSKLRSWAYNSLDSYKHELLRVLYPVFIHCFMDLIARGHLQEARNF
FNTFCEDHETMHQRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYAYELLLQYLHN
TQSITMLGVINEHINFQVSPGQPSSISDDADAVTLVDGGQDVANLTNQKEIQWGILEDSI
EDRLEKSGGLLSDSEKVDGEGKEGENEENKKRSVDGGKQSAPAKKSKKDKVGGVGGKAAR
PEPNTPSTAPRVKPELPLPVMPTAVEHSILEDLRNRVQLSSMALPSVSFYTFINTHNGLN
CASISHDGSLVAGGFSDSSLKVWDMSKLGKEMGNPTLQGEKDAAGNEQSFGVNDGKRPYT
LFQGHSGPVYSASFSPLGDFILSSSADSTVRLWSTKLNANLVCYKGHNYPVWDVQFSPYG
HYFATCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVRWHVNCNYIATGSSDKTVRLWDIQ
SGECARIFIGHRSMILSLAMSPDGRYMASGDEDGAIMMWDLASGRCITPLVGHTSCVWTI
AFSGEGSLLASGSADCTVKLWDINASTKMLRSEEKNGSSNRLRSLKTLPTKSTPVYSLTF
SRRNLLFGAGVLSKH
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagaaatagagagagcagtgattgcgtatttaaagaagaaaggttttaaa
caaactgagcttgcttttcaagaagaacatcaacttcaacaacacccacaacaacagtcg
aagaatttgtcttctaattctcaaactgacgcagatgttgctaagctcattctctctttt
acaattgagtcagagaggcttcctgcacaatatcatgatgggtacagcaagctaagatct
tgggcttacaattcacttgattcatacaagcatgaattgcttcgagtgctctacccagtt
tttatacattgtttcatggatctcattgcacggggccacctacaagaagcccgtaatttt
ttcaataccttctgtgaagaccatgaaactatgcatcagagggatctacaaaagcttgag
ggagttctttccccctctcatttggaggagatggagtttgcccatactttaaggcagagc
aaagttaacatcaagatttgtcagtatgcgtatgagcttcttttgcagtatctacacaac
actcaatctatcactatgcttggggttataaatgagcatattaacttccaagttagtccg
ggtcagcccagttcaatatctgatgatgctgatgctgtgacattggttgatggtggccaa
gatgtagcaaacctgacaaatcaaaaagaaattcaatggggtatactggaagattcaatt
gaggatcgcttggagaagagtggtggtttgctttcagattctgaaaaagtggatggggaa
ggcaaggaaggggagaacgaagaaaataagaaaagatctgttgatggaggaaagcaaagt
gctcctgcaaaaaaatccaagaaggataaagttggaggtgttggaggaaaagctgcacgc
ccggaacccaacactccttctacggcaccaagagtcaaacctgagcttcctttgccagtc
atgccaactgcagttgaacattctatcctggaagaccttcgtaatcgtgtgcagttgagt
agcatggccctgccatctgtaagcttctacacatttatcaatacacacaatggtttaaac
tgtgcctcaatttcacatgatggttccttggtggccggtggattttcagactcttcctta
aaggtttgggacatgtcaaagcttgggaaagaaatgggcaatcctactctacagggtgaa
aaagatgctgctggaaatgagcaaagttttggtgtaaacgacggcaaaagaccctatact
ttgtttcagggtcattctggtcctgtttattcagcctcattcagtccccttggagatttc
atcctctcttcttcagcagattcaactgtacgactttggagcaccaaactaaatgctaat
cttgtgtgctacaagggtcacaattaccctgtatgggacgtgcagttcagcccctatgga
cactattttgctacttgttctcatgatagaacagcaaggatctggtccatggacagaatt
cagccattgagaatcatggctggccatttgtcagatgttgattgcgtcagatggcatgta
aactgtaattacatagccactgggtcaagtgataaaacagttcggttatgggacattcag
agtggggaatgtgcaaggatattcattggtcacaggagtatgatattgtctttggcgatg
tcacctgacggacgatatatggcatccggtgacgaagacggtgcaatcatgatgtgggat
ctggctagtggtcgttgcattacccctttggtaggtcacacatcatgtgtatggacaata
gctttcagtggtgaaggctctcttcttgcttcgggatcagcagactgcacggtaaagctg
tgggatatcaatgcaagcacaaagatgttaagatccgaggaaaaaaatggaagttcaaat
agactccgatcattgaagactcttcctacaaaatctactccagtttattctttgacgttt
tcgaggaggaatttgttatttggagctggtgttctttctaaacactaa
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