Amaranthus tricolor (tampala): 130809909
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Entry
130809909 CDS
T09367
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130809909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130809909
03036 Chromosome and associated proteins [BR:
atri03036
]
130809909
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130809909
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130809909
PBAF complex
130809909
GBAF(ncBAF) complex
130809909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
130809909
NCBI-ProteinID:
XP_057531748
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Position
4:24024875..24038131
Genome browser
AA seq
763 aa
AA seq
DB search
MPTSPSDNRHKRRKARGPKITKRHRGIDDEEEDEEEDNDVAIEADEDEDLHPNPKNVQNP
RIEPEVISSSSVKISDFPAAVKYNVNRPHSSVLAIVAAERYRDHKAQPLAVLENISYGQL
QVLSAVPADSSAFGSSSLGDQDSPVVITPPPIMEGRGLVKKFWNRPHLLPFHAEWFQPTT
VHRLERQVVPHFFSGKAAELTPEKYLDYRNSIVAKYMESPEKRLLIGDCQELIVGVDKED
LSRIFRFLDHWGIINYCAPLPPHDSWSVESYLKEDPNGEVHVPAAMLKSIDSLIKFDLPK
ARLKSCDVSSSLIPNFDDHADLDSRIREMLSESHCNFCSQPLLVAYYQSVKEADTLLCSD
CYHEGRLVIGHSSIDFTKVDPTKESGDQQDGESWTDQETLLLLEALEIYNDNWNEIAEHV
GTKSKAQCILHFLRLPVEDSLLGKVEVPSSCSKTNGILKDKISRSHLNENGVSSGHQDHD
SDSEIRFPFVDSANPVMALVAFLTSAVGPRVAAACAHAALEALSEDDGLSNGNRMDLDDG
PVEVRNGNQSIDNVNSETSSLPAEKIKFAAKAGLAAAAMKAKLFADHEEREIQRLSANII
NHQLKRLELKLKQFAEVETLLMKECEQVEKTRQRLAGERARALATRYGPSGTGAGAGAAP
MGLPGVAPQANNNVSISRPPIVSPSASQHNVSGYSNSQVNHPQMSFLQRQQMFSFGPRLP
LSAIQPSSPGLPANVMFGAQGSDQSSPSHPLLRPVPGTSSGMG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgccaacttctccctcagataatcgccacaaaaggcggaaagcaagggggccgaagatt
acgaaaaggcaccgtggtattgacgatgaagaagaagatgaagaagaagataacgatgtt
gcaattgaggcagatgaagatgaggaccttcatccaaaccctaagaatgttcaaaaccct
agaattgaaccagaagtgatttccagcagttctgttaaaatctcggacttccctgccgct
gtaaagtataatgtgaaccggcctcattcctcggtcttggcaattgttgctgctgagaga
tatagagatcataaggcgcagcctcttgctgttttggagaatatatcgtatgggcagtta
caggtgttgtctgctgtgccagctgatagttctgcttttggtagttcaagtttaggggac
caggatagtcctgttgtgattacacccccacctattatggagggccggggcttggtaaag
aagttctggaacaggccccaccttcttccgtttcacgcagagtggtttcaacctacaacg
gtgcacaggttagaaaggcaagtggtgccacattttttttctggcaaggctgctgaactt
actcccgagaagtatttggactatcgtaattcaattgttgctaaatatatggaaagcccg
gagaagaggttattaattggtgattgccaagaattgattgttggtgttgataaagaagat
ctcagtcgaatctttcgtttcctagatcattggggcatcattaactactgtgctcctctg
cctcctcatgattcttggagcgttgagtcatatctaaaagaggatcccaatggtgaagtt
catgtaccagcagctatgttgaagtccattgatagtcttataaagtttgaccttccaaaa
gctaggttgaagtcttgtgatgtgtcctcatctttgataccaaacttcgatgatcatgct
gacttggacagtagaatacgagaaatgttgtcagaaagccactgtaatttttgttcccaa
cccctgttggttgcgtattatcagtcggttaaggaggctgatacattgctgtgttcagat
tgttaccatgaagggaggcttgttattggtcattcaagcatagattttaccaaggtagac
ccgacaaaagagagtggtgatcaacaagatggggaaagttggactgatcaggaaaccctc
ttactactggaggctcttgaaatctataatgataattggaatgaaatagctgagcatgtt
ggaactaagtccaaagcgcaatgcattctccactttcttcgtttgcctgtggaggacagc
ttactaggaaaagtggaagttccaagctcctgcagtaaaactaatgggatactaaaggac
aaaatcagcagatctcatctgaatgaaaatggtgtatcatcagggcatcaagatcatgat
tctgattcagaaattaggtttccgtttgtggattctgcaaatcctgtcatggctttggtt
gcatttttgacttctgctgtgggtcctagagtagctgctgcgtgtgcacatgctgctttg
gaagctctctcagaggatgatggtttatcgaatggtaataggatggacttagatgatggg
cctgtggaagtgagaaacggcaatcagtcaatagacaatgtaaattccgaaacctcttca
ttacctgctgagaaaatcaaatttgctgcgaaagctggtcttgctgctgcagcaatgaag
gcaaaactgttcgcagaccacgaagagcgagagatacaaaggctttctgctaatataata
aatcatcagctaaagaggttggaattgaagctgaagcagtttgctgaagtggagacctta
ttaatgaaggaatgtgaacaagtggagaaaacaaggcagaggctggctggagagagggct
cgggcattagcaactagatatggacctagtggaactggagctggagctggagctgcccca
atgggtttacctggtgttgctcctcaagctaacaataacgtaagcatcagcagaccaccg
attgtgtcaccatctgcttcacagcataatgtttctggttattccaatagccaagtcaat
catccacagatgtcattcttacaacgtcagcaaatgttctcttttgggcctcgattacca
ctttcagccatacaaccctcgtccccagggttgcctgcaaatgtcatgtttggtgctcaa
ggaagcgatcaatcttctccgagtcatccactattgagacctgtaccagggacaagctca
ggcatgggctga
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