Amaranthus tricolor (tampala): 130810052
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Entry
130810052 CDS
T09367
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130810052
03015 mRNA surveillance pathway
130810052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130810052
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130810052
mRNA cycle factors
P-body specific factors
130810052
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
130810052
NCBI-ProteinID:
XP_057531964
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All DBs
Position
4
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AA seq
501 aa
AA seq
DB search
MKEPLNRTKVVVRHLPPSLSQSSFFDQIDGRFSSRYNWSSFRCGKSSHKNQRYSRAYVNF
NSPDDVFEFAEFFNGHVFVNEKGTQYKAIVEYAPSQRVPKPNAKKDGREGTIYKDPEYVE
FLEQISKPVENLPSADVQLERKEAERVGVQEAPIVTPLMEYVRKRRASKSGHQHLGSDGK
SGGRSGLAAGKSRSSKQNSEKKKYILKNNAKSTNGKDKSTYILVTQRENEYEASRKKEVP
ENETGGGSYDIPKKRILLLKGKEQEISQASEGTTLPKIVTSPAEASSPSVGSKSNQRPDA
TGRIIRSILLSKEPRSSQSSSSVQAEQKVQGSNAERTRRPPRPSNMKAGGPAFAVEQSPS
GSEYVGKRSLEEKSSGRELHGFSAGREKQDRRTRSRERLDRGVWTPRRSDSSHTVDENQS
NLDSYEGKRGESKYDASSRNVEATSSAGGRNNSYSENGSYRSFGRRNPTHNVKDDGPPKR
AAVSHGLHEKQVWVQKSASGS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaccgttgaatcgaaccaaagtagttgttaggcacttgcccccttctctttct
cagtcttcctttttcgaccaaatcgatggccgtttctcttctcgctacaattggtcctct
tttcgctgcggcaagtcgagtcacaagaaccagaggtattcacgggcatatgtgaacttc
aatagtcctgatgatgttttcgagttcgctgagttctttaatggccatgtatttgtcaat
gaaaaggggacacaatataaagcaatagtggagtatgctccttctcaacgtgttcctaag
cctaatgccaagaaagatggtcgagaagggactatatacaaagatcctgagtatgtagag
ttccttgagcagatttccaaacctgttgagaatcttcctagtgctgatgtacaactggaa
agaaaagaagctgagcgagttggtgttcaagaagcacctattgttacaccgctcatggaa
tatgtgcgaaaaaggagagcttcaaagagtggccaccagcatttagggtctgatggaaag
agtggtggaaggtctgggttagctgcagggaagtctcgttcaagcaagcaaaactctgaa
aagaaaaagtatatcttgaaaaacaatgcgaagagcacaaatgggaaagacaaatcaaca
tatattctcgtgactcagagagagaacgaatatgaggcttcaagaaaaaaagaagtacca
gagaatgaaactggaggtggttcgtatgatattccaaagaaaaggattctgcttttgaaa
gggaaagagcaagagatttctcaggcttctgaaggcacaacactgcccaagattgtcact
tcacctgccgaagcttcatctccttcagttggttcgaaatcgaatcagaggcctgatgct
actggaagaattattagaagcatattattgagcaaggaacctcgttctagtcagtcatcc
tcatctgttcaggcagagcagaaagtgcagggctccaatgcagagaggacaagacgacca
ccaagaccgtctaatatgaaagcaggagggccagcttttgcagttgaacagtcaccttct
ggttcagaatatgtgggaaagaggtcattggaggaaaaatcttctggaagggaactccat
ggttttagtgccggtcgtgagaaacaagacagacgcacaaggagtagggagagacttgat
cgcggtgtctggactcctcgtcgatctgattcttctcatactgtcgatgagaatcaaagt
aatttagattcttatgaaggtaaacgtggagaatcgaaatatgatgcatctagccgtaat
gtggaagccacatcttctgcaggtggccgcaacaactcatattcagaaaacggttcctat
aggagttttggtcgccgtaatcctacacataatgttaaggatgatggccctcccaaaaga
gctgcagttagtcatggtcttcatgagaagcaagtgtgggtgcagaagtcagcctcaggc
tcttga
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