KEGG   Amaranthus tricolor (tampala): 130810305
Entry
130810305         CDS       T09367                                 
Name
(RefSeq) uncharacterized protein LOC130810305
  KO
K12828  splicing factor 3B subunit 1
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130810305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atri03041]
    130810305
   03036 Chromosome and associated proteins [BR:atri03036]
    130810305
Spliceosome [BR:atri03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    130810305
 Complex B
    130810305
 Complex C
   U2 SnRNP specific factors
    130810305
Chromosome and associated proteins [BR:atri03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    130810305
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_2 HEAT_ECM29 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd ParcG Adaptin_N TAF4
Other DBs
NCBI-GeneID: 130810305
NCBI-ProteinID: XP_057532292
LinkDB
Position
4:complement(12477611..12482235)
AA seq 1273 aa
MDPEIAKAQEERKKMEQELASLSSLTYDTELYGNNKREDYLTSIPVDDNEDLADGMDNNE
VARKLASYTAPKSLLKDMPGTGGDVDDGFRKPSRIIDREDDYRRRRLDRVISPARHDAFA
MGDKTPDVGTRTYAEVMRDEALKREKEETLRAIAKKKKEEEEQKKLDDERGAAGVAAQAQ
AGQKRRNRWDQSEDQQTDGSEVKKAKSSSDWDLPDSTPGIGRWDATPTPGRLGDATPSVR
RNRWDETPTPGRVNDSDATPAAGGVTPGATPAGMTWDATPKLAGMATPTPKRQRSRWDET
PATMGSATPMPGETPNVAMTPGVTPVGGLDMATPTPGQINLRGPLTPEQYNLMRWEKDIE
ERNRPLTDEELDAMFPAEGYKILDPPATYVPIRTPARKLLATPTPIGTPLYQIPVEDRSQ
QFDVGKEPANGLPFMKPEDYQYFGVLLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQR
KTALRQLTDKARELGAGPLFNQILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVH
KILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAF
SVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEH
GLNDENQKVRTITALSLAALAEASAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGF
IIPLMDALYASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEANYIRSDILP
EFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRVVEDLKDESEPYRRMVMETI
EKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQ
ICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLG
SILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVP
AREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVC
TTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTP
LLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVT
EAIDGMRVALGAAAILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLEDEG
ENVYSRPELLMFV
NT seq 3822 nt   +upstreamnt  +downstreamnt
atggacccagaaattgcaaaggctcaggaagagagaaaaaagatggagcaagagttggct
tcactttcatctctgacttatgatactgaactttatggaaataataagagggaggattac
cttacatctattccggttgatgataatgaggatctggccgatgggatggataataatgag
gttgctaggaaattggcgtcttatacggctccaaagtcacttttgaaggatatgccgggt
actggaggtgacgttgatgatgggtttaggaagccatccaggattattgatcgtgaggat
gattaccgtagaaggaggcttgatcgagttatttctcctgcaaggcatgatgcttttgca
atgggtgataagacaccagatgttggtacaaggacttatgctgaggtgatgagggatgag
gcgttgaaaagagaaaaggaggagacattacgtgcgattgctaagaagaagaaagaggag
gaagaacagaagaaactagatgacgagagaggtgctgctggtgttgctgctcaagctcag
gctggtcagaagaggagaaacaggtgggatcagtctgaggatcagcaaacagatgggagc
gaagtcaagaaggctaaatcttcatctgattgggatttgcctgattctacccctgggatt
ggtagatgggatgctactccaacgccagggagacttggagatgctacgccttctgttagg
aggaataggtgggatgagacaccgacgcctggccgtgtaaatgattctgatgctacgcca
gcagctggaggggttactcctggtgctactccagctggtatgacgtgggatgccactcca
aaacttgcaggaatggcaactccgacacctaagcgtcagagatccaggtgggatgagact
ccggcaaccatgggcagtgcaactcctatgcccggggaaacccccaatgtggctatgacc
cctggtgtcactccagttggcggacttgatatggctacacccactccagggcagattaat
ctgcgaggccctcttactcccgagcaatataacttgatgaggtgggagaaggatattgag
gagaggaacagacctttgacggatgaagaacttgatgccatgttcccagctgaaggttac
aagatcttggacccaccagctacatatgttcctattcgaactccagcaaggaagcttctt
gccacacctactccaatcggtactccactttatcaaataccggttgaagatagaagtcag
cagtttgatgtggggaaggagcctgctaatggattgccatttatgaaaccggaggattat
cagtattttggagtgttgttgaatgaagaaaatgaggaagagctttctccagaagagcag
aaggaaagaaagattatgaagctgctgctgaaggtgaaaaacggtacacctcctcagaga
aagactgcgttgaggcaactcactgataaggcaagagaattgggggctggcccattgttt
aatcaaattcttcctttgcttatgcagcctactttggaggaccaagaacgacatcttttg
gtgaaagttatagacagggtgctatataagctggatgagcttgttcggccatttgttcac
aagattcttgtggttattgagcctcttttgattgatgaagactattatgctcgtgtcgag
gggagagagattatctcaaacttgagtaaagctgctgggttggctaccatgattgctgcc
atgagacccgatattgacaatattgatgagtatgtgaggaatacaactgcaagggctttt
agtgttgtggcttcagctttaggcattcctgctctgcttccatttttgaaggccgtgtgt
caaagtaagaagtcatggcaagctaggcacacaggtattaagatcgttcaacagatagcc
atcttgattggttgtgctgtgttgcctcatctgagatccttggtggaaatcattgagcat
ggtctgaatgatgagaatcagaaggtcagaactattaccgcactttctcttgcagctctg
gctgaggcttcggccccatatggtatagagagttttgattctgtgttgaaacccttgtgg
aaaggtattaggtcacaccgtggtaaggtcctggctgcatttttgaaggcaatcggtttt
atcattccattgatggatgccctttatgctagctactatacaaaagaagttatgtttatt
ttgattcgggagttccagtcacctgatgaagaaatgaaaaagattgtcctgaaagtggtc
aagcagtgcgttagcactgagggtgtggaggctaactacattagaagtgatattcttcca
gagttctttcgaaacttctgggttagaagaatggcattggacaggaggaactacaagcag
cttgtggagaccactgttgagatagcaaataaggttggggttgccgatattgtgggtagg
gtagtggaggatcttaaagatgagagtgaaccctataggcgtatggttatggagaccata
gaaaaagtagttacaaacttgggggcatctgatattgatgctcgcttggaagagctttta
attgacggtattctttatgcttttcaagagcaaactagtgatgatgccaatgttatgctt
aatggttttggcgctgtggtcaatgctctaggccaaagagttaagccctatcttccacaa
atttgtggtacaattaagtggcgtttgaataacaagagcgcaaaagtaaggcagcaggcc
gctgatcttatttctcgaatcgcagttgttatgaaacagtgtggagaggagcagctaatg
ggtcacttgggtgtggttttgtacgagtacctcggtgaggaatatcctgaggtgttgggt
tctattttgggagcacttaaagcaattgttaatgtcataggtatgactaagatgactcca
ccaatcaaagatctactccctaggttaactcctattttgaagaacaggcatgagaaagta
caggagaattgtattgatcttgtgggccgtattgctgaccgtggtgctgaatttgtacct
gcaagagaatggatgagaatatgctttgaacttctggagatgctcaaggctcacaaaaag
ggcattcgacgagccacagtcaacacctttgggtacattgccaaagctattggacctcaa
gatgtcttggctactcttctaaacaatcttaaggttcaagagcgtcaaaaccgtgtttgt
acaactgtagctattgctattgttgctgaaacttgttcacccttcactgttttacctgca
ctcatgaatgaataccgtgttcctgaacttaacgttcaaaatggtgttctcaaatcccta
tctttccttttcgaatatatcggtgaaatggggaaggattacatatatgctgtcaccccg
cttctcgaggatgctcttatggaccgagacctggttcaccggcagacagcagcttctgct
gtgaaacacatggctctaggagttgcaggtttaggctgtgaagacgcattggtgcacctc
atgaattacgtgtggcccaacatctttgaaacttcaccccacgtgatcaacgctgttaca
gaagcaattgatgggatgagagtagctttgggtgctgctgccatactgaactattgtctg
cagggtttattccacccagcaagaaaagtgagggaagtgtactggaagatatataactct
ctttatattggagcacaagatgcacttgtggctgcttatccaaccttggaagatgaagga
gagaatgtctatagtagacctgagctgttgatgtttgtgtaa

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