Amaranthus tricolor (tampala): 130810416
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Entry
130810416 CDS
T09367
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X1
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130810416
Enzymes [BR:
atri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130810416
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130810416
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-ANAPC11
zf-C3HC4_3
AF_0924
zf-C3H2C3
zf-RING_4
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
130810416
NCBI-ProteinID:
XP_057532449
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All DBs
Position
4:4363625..4368649
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AA seq
460 aa
AA seq
DB search
MGIEVFRLIVLFSLSLIMMLGFSFASVVINGGNFTLQFEDIEANFAPPLRSAGLCGELYI
AEPLDACSPLNNTVEHHGNCSSPIALIIRGGCSFENKVRRAQNAGFEAVIIYDDEDSGAL
VASNFHFLISNCISVAGNPAGIKIHAAFVSKATGEKLRTYANSGVEVWMLASYESSAWSI
MAISFISLLAMSGLLATCFFVRRHRVRRERPQARVREFHGMSSRLVKAMPSLIFTAVTEE
NCTASTCAICLEDYIVGDKLRVLPCRHKFHTFCVDAWLTSWRTFCPVCKRDARTSTGEPP
ASESTPLLSSNPSSVASSPFSSFRSSSVRSSAMQIASPTPQSHPTSQNNSISSSRQIPRH
PNSYHSRHSPSISISQSSMDLRNMSSQRSYTSQYISPSSMGYPSISPLNTRYVSPYIPSP
SNASSSFLGSSSMRYLTPLHYSESAASFSPYNSAHSLPGC
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgggtattgaagttttccgactaattgtgttatttagtttgtctttgatcatgatgttg
ggtttttctttcgcttctgtggttattaatggaggaaatttcacccttcaatttgaagac
attgaagctaactttgcaccaccattgaggtctgccggtttatgcggggaattgtacata
gctgagcctctagatgcttgttcaccattgaataatacagtggaacaccatggaaattgc
tcatccccaattgcattgatcattagaggtggatgtagctttgaaaataaagttaggaga
gcacagaatgcaggttttgaagctgtgattatatatgatgatgaggatagtggtgctttg
gttgcaagtaattttcattttcttatctctaattgcatctctgtggcgggaaatcctgct
ggtattaaaatccacgcggcatttgtttcgaaagcaactggagaaaaattaaggacgtat
gctaattctggcgtcgaagtgtggatgctagctagctatgaaagttccgcatggtcaata
atggcaatttccttcatttctctactagcaatgtctggtttgctggcaacttgttttttc
gttagaaggcaccgtgttagacgtgaaaggcctcaagctcgagttcgcgaatttcatggg
atgagtagtcgactagtcaaagctatgccaagcttgatattcactgctgtaactgaggaa
aattgcaccgcatcaacctgtgccatatgccttgaggactacattgttggagataagctc
cgagttttgccttgtcgtcataaatttcacacgttttgtgtggatgcttggctcacctca
tggagaacattttgcccagtttgcaaacgagatgcaaggactagtaccggtgaacctccc
gcatcagaatctacaccattgctctcatccaacccatcgtctgttgcttcttcacctttc
tcttcatttagatcctcatcagtacgctcctccgcaatgcaaatagcttcaccaactcca
caatcccatccaacttctcaaaataactcgatttcaagtagtcgtcaaataccccgtcat
cccaactcatatcatagtcggcattctccttctataagtataagtcaaagctccatggac
cttaggaatatgtcctctcaaaggtcatacacttctcagtatatttcccctagttcgatg
ggctacccgtctatctcacctctcaatactagatacgtgtctccgtatattccaagtcct
agcaatgcttcatcaagctttctcggatcttcttctatgagatatctgactccattgcat
tatagcgaatctgctgcgagtttttctccatataactctgcacattcccttcccggatgc
tga
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