Amaranthus tricolor (tampala): 130810425
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Entry
130810425 CDS
T09367
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atri03009
]
130810425
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130810425
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
Pre-60S particles
Helicases
130810425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
P-loop_SecA
WHIM1
Motif
Other DBs
NCBI-GeneID:
130810425
NCBI-ProteinID:
XP_057532463
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All DBs
Position
4:28025877..28034858
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AA seq
814 aa
AA seq
DB search
MAKTEGQNPKSSGVTSLKTHSNVFRKSDHQDKKKKKPGFLVSSKAELTRKEKHKKKAKSG
GFESLNLSYNVYKAIKRKGYTVPTPIQRKTMPIIFAGADVVAMARTGSGKTAAFLIPMLE
KLKQHVPQAGVRALILSPTRDLALQTLKFTQELGRFTDLRTSLLVGGDSMESQFEDLAQS
PDIIIATPGRLMHHLSEVDDLSLRTVEYVVFDEADSLFDMGFAEQLHSILTQLSESRQTL
LFSATMPSALEQFARAGLRDPQLVRLDVESKISADCKLTFFTLRPEEKLAALVYLVREVI
RPEEQMLIFVSTKHHTEFLKSLLAQEGIESAICYGDMDPEARKINLSRFRSGKTRLLIVT
DVASRGIDIPLLDNVIIWDYPPRPKIFVHRVGRVARNGRTGTAYSLVTFEDMPYFLDLHL
FLSKPFRPAPTEEKLLKDMDGVMAEIDLAMANGVTVYGRFPQTVLDLLQDKLRDLIDSSA
DLTALQKTSRNAYREYLKTKPLPSKQSIRRVKDLPREGLHPMFKGVLGGNELTALAFTER
LKSFRPKQTILEAEGHAAMSKHLKGSSSQWVDVMKKKREVHEHIINQVQQKSSADKEVKE
SEPEINFVKTTKKKETSGSKRKAVSFKNEEFFISPVPTNQYSEAGLSVRSDGFGMNRLDS
AVMDLVADDKVGMQKQKNVYHWDKKSKKYVKLNNGDRVTASGKIKTEGGKKVKAKKTGIY
KKWKASTHNKIANKGADDGHVGVSGSAVGRFKRGFKGRYQQRSIPNAHVPSEIKDLEQVR
KERQKKASQQSAMKNKKSKRGSKFGKSGKKRKAK
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacggagggtcagaaccctaaatcatcaggagttacatcccttaaaacacac
tccaatgtctttcgaaaaagtgatcatcaagacaagaagaagaaaaagcctggtttctta
gtaagttcaaaagcagagttaacgcgcaaagaaaaacacaagaaaaaagccaaatcagga
gggtttgaatccttaaacttaagttataatgtctataaagcaatcaaaagaaaaggatat
acagttccaaccccaattcaacgtaaaactatgcctattatctttgctggggctgatgtt
gttgctatggcgcgtactgggtctggaaaaactgctgcttttcttatccctatgcttgaa
aaattgaagcagcatgttcctcaagctggtgttagggctttgattttgtctcctaccaga
gatttggcacttcagactttgaagtttactcaggaactgggtcgttttacagatcttcgt
acgagtcttttagttggtggggattcaatggaaagtcagttcgaagatttggctcagagt
ccagacattattattgccacaccgggtagactgatgcatcatttgtctgaggtggatgat
ttatcgcttcgaactgtggaatatgtggtctttgatgaagctgattcattgtttgacatg
ggttttgccgagcaattgcattcaattctgactcagttgagtgagagtcggcagactttg
ctttttagtgctactatgccaagtgctttggaacagtttgctcgggctggtttgcgggat
cctcagcttgtacgcttggatgtggagagtaaaattagtgctgattgtaagctcaccttt
ttcaccttgaggccggaagagaaacttgcagcccttgtgtatttggtaagggaagtaatc
aggcctgaggagcaaatgttgatctttgtttccactaaacaccatacagagttcttaaaa
tcattgcttgcacaagagggtattgaatccgctatatgctatggtgatatggatccagaa
gctcgtaaaatcaacttatcgaggtttcgatcagggaaaacgagactgctaattgttaca
gatgttgcttctagaggcattgacattcctttgttggacaacgtaattatttgggactac
cctccaagacctaaaatatttgtacatcgtgttggtagagttgcgaggaatggtcgcact
ggcactgcttactctctcgtgacgtttgaggatatgccttactttttggaccttcatcta
tttctgtcgaaaccttttaggcctgctccgacagaagagaagcttctgaaagatatggat
ggtgttatggctgagattgatctagctatggccaatggagtgactgtgtatgggcggttt
cctcaaactgttttagatcttcttcaagataaacttagggatctcatagactcatctgcc
gatttaactgctttacaaaaaacttcaagaaatgcatatcgtgagtatttaaagacaaag
cccttgccgtcaaagcaatcaattcggagagttaaggacttgcctcgcgaaggcttgcac
ccgatgtttaaaggggtgttaggaggcaatgagctaaccgctttagcgttcactgaacgc
ttaaaatcttttagaccgaagcagacaatcttggaagctgaaggtcatgctgccatgtca
aagcatcttaaaggttcttctagtcaatgggttgatgtgatgaagaagaagagggaagtt
catgagcatattattaaccaggtgcaacagaaatcctccgctgacaaggaagttaaggaa
tccgaacctgagataaattttgtcaagacaacgaagaaaaaagaaacttctggttcaaaa
agaaaagcagtgagcttcaagaatgaggagtttttcatcagtccagtgccaacaaaccag
tattcggaggctggactctcagtgcgaagtgatggctttggaatgaataggttggattca
gctgtaatggatttagttgcagatgataaggtgggcatgcagaaacaaaaaaatgtctat
cactgggataagaaaagcaaaaagtatgtcaagcttaataacggcgatcgtgtaactgcc
agtggaaagattaaaactgaaggagggaagaaagtgaaggctaaaaaaactggtatttac
aaaaaatggaaagcaagtacgcacaataaaattgctaacaaaggagctgatgatggacac
gttggagtatcaggctcagcagttggtcgatttaagagaggattcaaaggacgataccaa
caacgatccattccgaatgcacacgtgccttcagaaatcaaagaccttgaacaagtgcgt
aaagagagacaaaagaaggcaagccagcaatcggcaatgaaaaacaaaaaatcaaaacgg
ggaagcaaatttggtaaaagcggcaagaaaagaaaggccaagtag
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