Amaranthus tricolor (tampala): 130810452
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Entry
130810452 CDS
T09367
Name
(RefSeq) serine/arginine-rich splicing factor SR34A-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130810452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130810452
Spliceosome [BR:
atri03041
]
Common components
Common spliceosomal components
SR proteins
130810452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Smg4_UPF3
Sharpin_PH
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
130810452
NCBI-ProteinID:
XP_057532503
LinkDB
All DBs
Position
4:3199898..3206960
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AA seq
249 aa
AA seq
DB search
MQTCSEIDSLRMAGSGRASRTIYVGNLPLDVKEYELEDLFYKYGRIVDIELKLPPRPPGY
SFVEFEDPRDAQDAIRGRDGYNFDGCLLRVELAHGGRGRSPMGPRGGRGGNSGGGQYSVS
RHSEFRVVVRGLPPSASWQDLKDHMRKAGDVCFAQVFRDGEGMMGIVDYTNYEDMQYAIR
KLDNTEFRNPFSRSYMRIKAYEGSPPRNRSRSRSPIRDRSRSLERSPRPAPRSSSASLAE
PSRTFVTGD
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacctgcagcgaaattgattcattacggatggctggtagtggtcgtgcctcccgc
acaatttatgttggaaatcttccgctggatgtaaaggaatatgagcttgaagatctgttt
tacaagtatggccgtatcgtagatattgaattgaagcttcctccacgccctccaggctat
tcttttgtagagtttgaggatcctagggatgctcaagatgcaataaggggtcgtgatggc
tataactttgatggttgtcttctgagggttgagctggctcatggtggtaggggtaggtcc
cctatgggcccacgtggtggcagaggtggcaatagtggaggtgggcagtatagtgtttcc
cgtcattctgagtttcgagttgttgtgcgtggactgcccccttcggcctcgtggcaagat
ctgaaggatcatatgcgtaaggctggggatgtgtgctttgcgcaagtttttcgtgatggt
gaaggtatgatgggaatagttgactatactaattatgaagatatgcaatatgctatacgc
aaactggacaacactgaatttcgaaatcctttctcaagatcctacatgcggataaaagct
tacgagggtagtccaccaagaaaccggagtaggagtaggagcccaatccgagatagaagc
agaagtttagaaaggagcccaagaccggctccaagatctagctctgcatcccttgcagaa
ccatcaaggacctttgttacaggggattaa
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