Amaranthus tricolor (tampala): 130810470
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Entry
130810470 CDS
T09367
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130810470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130810470
03036 Chromosome and associated proteins [BR:
atri03036
]
130810470
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130810470
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130810470
mRNA degradation factors
5'-3' decay
Decapping complex
130810470
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130810470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
130810470
NCBI-ProteinID:
XP_057532526
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All DBs
Position
4:complement(10627429..10646060)
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AA seq
527 aa
AA seq
DB search
MNDNNVRGRYPPGMGRGRGGMGIDSGGYGNPNFQARNFQQQPHYAQRGMVQNHHQQMQQH
HQMQQQQHKQMQQQQQHKQMQQQQQHKQMQQQQQWLRRNQLGGNSESAGVNEVEKTIQPE
ATDTSSQDWKARLKLPPPDTRYRTEDVTTTKGNEFEDYFLKRELLMGIYEKGFERPSPIQ
EESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQAVILVPTRELALQTSQV
CKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKECSMLI
MDEADKLLSPEFQPSIEQLIQFMPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDEL
TLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI
HAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGR
SGRYGHLGLAVNLITYEDRFNLYKIEQELGTEIKQIPPHIDNAVYCL
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacaacaatgttagaggtcgttatccgcccggaatgggtagaggaagaggtgga
atgggcatagattcaggaggttacggaaaccctaattttcaagctaggaattttcagcaa
caaccgcattatgcgcaaagaggaatggtacagaatcatcatcagcaaatgcagcaacac
catcagatgcagcagcaacaacataagcagatgcagcagcaacaacaacataagcagatg
cagcagcaacaacaacataagcagatgcagcagcaacaacaatggttgaggaggaatcag
ttgggaggtaattcagaatctgctggtgtcaatgaggttgagaaaacaatccagccggag
gctactgatacgagttcgcaagattggaaggcaaggttgaagttaccaccaccagacact
cgctataggacagaggatgtgacgacaaccaaagggaatgaattcgaggactattttctt
aagcgcgagttattgatgggtatatatgagaaggggtttgaaaggccatctcctattcag
gaagaaagtattccaattgcacttactgggagtgatattcttgctagagcgaaaaatgga
acaggaaaaactgctgctttttgcattccagctttggaaaaaattgatcaagacaacaat
gttattcaagctgtcatcctggtccctactagagaattggctctccagacatcacaggtt
tgtaaagaacttgggaagcatcttaaaattcaagttatggtcaccactggtggaaccagt
ttgaaagatgatatcatgcgactgtatcaaccagttcatttgcttgtgggaactcctgga
cgtattttagaccttgcaaagaagggagtttgcgttctgaaagaatgttcaatgcttata
atggatgaggctgataagcttttgtctccagaattccaaccatctattgagcaacttatc
caatttatgccaacaaatcgtcagattttaatgttttcagctacattccctgtaactgtc
aaagattttaaagatagatatctacataagccgtatgtaatcaacttgatggacgagctt
actttgaagggtataacacaattttatgcttttgttgaagaaagacaaaaagttcattgc
ctcaacacccttttctccaagcttcaaatcaaccagtcaattattttctgcaattctgtg
aaccgtgttgagttgctagccaagaagattacagagctcgggtattcttgcttttacatt
catgcaaagatgctgcaagatcatcgcaacagagttttccatgattttcgtaatggtgca
tgcagaaaccttgtgtgcactgatttatttactaggggtatagacattcaggctgtcaat
gtcgtaatcaatttcgacttcccaaagaattctgaaacctacctccacagggttggtcga
tcagggaggtatgggcatcttggtctagctgtgaatttgatcacttatgaagatcgtttt
aacttgtataagattgagcaagaacttggaactgaaataaagcagattcctccacatata
gataatgcagtctactgtctttaa
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