Amaranthus tricolor (tampala): 130810492
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Entry
130810492 CDS
T09367
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130810492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130810492
Spliceosome [BR:
atri03041
]
Complex B
Other components
Prp19-related factors
130810492
Complex C
130810492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
RRM_occluded
zf-CCCH_3
zf-CCCH
RRM_3
zf-CCCH_4
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
130810492
NCBI-ProteinID:
XP_057532594
LinkDB
All DBs
Position
1:complement(19692980..19697955)
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AA seq
468 aa
AA seq
DB search
MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE
EHDRRARAGLDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMQTLEPPDDESIKTLYVGGLDNRIT
EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREAAEKAAEELSNKLVIKGLRLKLMWGR
PQQPKPELDGDEHAKQQAAVAHSGMLPRSVISQQQSHLHPPRTSQDQLPPAMPYFNIPPP
PQQDRTYYPSMDPQRMGARVPSQDGSSSGPSGSGENKSGPSGYGIYQGLPPPQPPPPGNY
QQPYYPPYGYMLPPPPQYQHYPPSQYHNQPAGPGAPQPPPSSQAQQQQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggctcatcgactgcttcgagatctagaagccgatggttgggagcgttctgacttccct
atcatctgtgaatcttgcctcggcgacaatccttatgttcgcatgactagagcggaatat
gataaggaatgtaagatatgtacaagaccatttactgtttttcgatggagaccaggtcgc
gatgcgagatataaaaaatctgagatttgccagacatgcagtaaactgaaaaatgtatgc
caagtttgcctcttggatcttgagtatggtcttccagtacaggttcgtgatactgctctt
agcatcagcagcaatgacgccatccccaagagtgatgtcaatagggaatattttgctgag
gaacatgaccgcagggctagagcaggtctggattatgaatcctcttatggaaaggcgcgg
cctaatgacactattttgaagcttcagagaacaacaccatattataagagaaacagagca
catgtttgcagtttctatataagaggtgaatgtaccagaggtgctgagtgtccttatcgg
catgaaatgcctgttactggggagctatcacagcaaaatattaaagatcgttattatgga
gtaaatgatccggttgcaatgaagctccttaacaaggcaggcgaaatgcagacactcgaa
cctccagatgatgaaagcatcaagactctttatgtgggtgggcttgataatagaataact
gagcaagatctgagggacaacttctatgcccatggtgaaattgaatccatacggatggtt
cttcaacgagcttgtgcttttgtaacatacactactcgagaagctgctgagaaggctgca
gaggaactctctaataaacttgtcataaagggtttaagacttaagctaatgtggggtcga
cctcagcaaccaaaacctgagcttgatggtgacgagcatgcaaaacagcaggcggcagtg
gctcacagtggaatgcttcctcgatctgtcataagtcagcaacaaagtcatcttcacccc
cctagaacaagtcaagatcagctccctccagcaatgccttattttaatattccacctcca
cctcagcaggataggacttattatccttcgatggatccccaacgaatgggtgctcgtgtt
ccatcacaagatggttcctcaagtgggccttcaggatctggggaaaacaaaagtgggcct
tcaggatatggcatctaccagggtttgccaccgccacaaccaccaccaccaggtaattat
caacaaccatattatccaccttacggttatatgctacctcctcctccacagtaccagcat
taccctccatcccaataccataaccagcctgctggccctggggctcctcaacctccaccg
tcatcgcaggctcagcagcagcaataa
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