Amaranthus tricolor (tampala): 130810917
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Entry
130810917 CDS
T09367
Name
(RefSeq) probable galacturan 1,4-alpha-galacturonidase SALK6
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri00040
Pentose and glucuronate interconversions
atri01100
Metabolic pathways
Module
atri_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130810917
Enzymes [BR:
atri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
130810917
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
130810917
NCBI-ProteinID:
XP_057533022
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Position
4:27326792..27328430
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AA seq
412 aa
AA seq
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MAPKTKISMFFVLFHLLIVAINGAKPAPGGGTVFDITKHGAKPNADATQGFMAAWKAACA
SPTPSKVLVPKGTYNLRAVKLIGPCKSKVTIELLGNFKASSDPAQFKGEDAWFKAERIDG
LTITAHKGAGVFDGQGQVAWKKNDCSKTGKCDSLPYNFRFNYLTDSAINGITSLNSKLFH
MAILGCKQLKMNSITVTAPKDSLNTDGIHIGRSDGVNLTGAHIQTGDDCVSIGDGAKNVH
IEQITCGPGHGISVGSLGRYPNEEPVQGVTIKGCVLKNTDNGVRVKTWHNSYAGKVTGLH
FEDIKVENVLNPIIVDQEYCPYNHCKQKTPSKVKLSDIRFKNVRGTSATKEAVKVVCSSG
VPCDKVQLSDIDLKYSGADGPAVSMCKNVKPILTGKQNPPACDAPATPSKDL
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaaaactaaaatttctatgtttttcgtcttatttcatttgcttattgtagca
attaatggtgccaagccagcccccggtggtggcaccgtgtttgatataaccaagcatgga
gcgaagcctaacgctgatgcaacacagggatttatggctgcttggaaagcggcttgtgca
tcgccaactccaagcaaagtgttggttcctaaaggtacatacaacttacgtgcagttaag
cttatcggtccatgcaagtcaaaagttactatcgaactcttaggaaacttcaaggcctct
tccgatccagctcaatttaagggcgaagatgcctggtttaaggcagaacgtattgatggt
ttgacgatcacagctcataaaggtgctggagtttttgatggtcaaggacaagtagcctgg
aaaaagaatgattgctccaaaaccggaaaatgtgatagccttccttataatttcaggttc
aattacttaacagattcagcaatcaacggcataacatctctaaacagcaagttgtttcac
atggcaatcttaggatgcaagcaactaaaaatgaacagcattacagtaacagcaccaaaa
gatagtcttaacaccgacggaattcacataggacgttcagatggggtgaatctaacaggt
gcacatattcaaacaggggatgactgtgtttccattggagatggtgctaagaacgtccat
atcgagcagatcacttgtgggccaggacatggtatcagtgtaggaagtctaggaagatac
cctaatgaggaaccagttcagggtgtcaccataaagggatgtgtcctcaagaacacagac
aatggtgttagggtaaagacatggcataactcttacgcaggaaaagtgaccggtctgcat
tttgaggacatcaaggtcgaaaatgttttgaacccaatcattgttgatcaggaatattgc
ccctacaatcactgcaaacaaaagacaccatccaaagtgaagcttagtgacatccgattc
aagaatgtgaggggtacatcagccaccaaggaagccgttaaggtggtttgtagcagtggt
gtgccatgtgataaagtacagctctcagatatagacttgaaatacagtggtgctgacggt
cctgcagtctctatgtgtaaaaacgtcaagcctatcttaacaggaaagcagaacccacct
gcttgtgatgcacctgctacccctagcaaagatctctaa
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