Amaranthus tricolor (tampala): 130811119
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Entry
130811119 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130811119 isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130811119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atri04131
]
130811119
Membrane trafficking [BR:
atri04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130811119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
TPR_VPS8_2
Clathrin
WDR55
ANAPC4_WD40
Beta-prop_EML
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
CARD
WD40_Prp19
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
130811119
NCBI-ProteinID:
XP_057533277
LinkDB
All DBs
Position
4:complement(3212211..3230864)
Genome browser
AA seq
1896 aa
AA seq
DB search
MAENHSTSTFSTPENQELDLDSFLRRHNAASSSSSDEEEEQIHRGSDILLRTVDDILNES
SSDSENPVSSVSSTLSHTKTLISSDKQFNSTQFKSNLFQRIKSEDFSRKLPISSQNSRNS
SIFSGGFSRKPGAALAAAAAASKSVRRRTLSVNLEGRVSDLDELSGLFKEDVKSEGCDSN
LSVNEVVEEVIEERQKNAIDFCESIDEKVGSELENDEFANVVLNSSVEKEETISASKSIG
VLDFGDGEKIENEDFADDEHKVGEARTGDESLEYDNEKEVEQDSTRELQEAEICAVVLDS
HELSTDRDGVCSIGDDVNDLVEDTIAELETQIDSIMVEEEKLLPPKKALELAEDIEIKQA
STGQDWEEGAAAQPMRLEGARRSSTVLGYFDVNADNSISRTIKSQAFVRDYGNPQAIAVH
LNYIALGMSKGVVVVVPSKYSAQHPDNIDLSKTMFLGMQADRSQAPVMSICFNQQGDLLL
AGYGDGHIVLWNVRRGTVVKVITGGHKAPVVHTLFLGQDPQVTRQFKAITGDSKGLVQLH
DFSSAMLGLSVTTKCLLDGEKTSTVLSASPLLPDEFSFSGTTTSSASSVGSVMGAVVGGA
TSWKLFTEGSSLSEEGVVIFVTHQTALVVRLSPILEVYVQFPKLEGAREGSIPYTAWKCT
TQSRGPSSESTKSEALERISLLALAWDRKVQVTKLVKSELKESGKAEPKESGQWMLKVCG
NWTLESPAVGLAWLDDQMLVILTLSGQLCLFTRDGTFIHQTSYGIDGNGGDDLISYHTYF
TNVFGNPEKSYQNSLYVRGASVYILAPTHVVICRFLLWRERIEVLRNAGDWMGAFNMAMT
LYDGQAHGVIDLPRDLHAIQEAIMPYLVELLFSYVDEVFSYISVACFNQIEKEVDGSVTV
SNSASSEIKEQFTRVGGVAVEFCVHIKRTDILFNEIYSKFVSVQHRDTFLELLEPYILKD
MLGSLPPEIMQALVEHYNRKGWLQRVEQCVLHMDISSLDFNQVVRLCRENGLYGALIYLF
NKGLDDFKTPLEELLSVLRNHGRGAACAAVGYRMLVYLKYCFSGLSFPPGHGKLPFERLP
SLRMELLQFLLQDSGGPKSQTGASLTSTGAYLHLHYLLELDTESTLDVLRIAFVEDDGFR
DATVDNLKDNDLNADDQNMLVQKTVDALVIVLDIDISQSVRSCGSDDTAKVVWPSKKDIG
HLIEFVASYVASKRADVSKSVLSQILEYLTSENHIVLNECEQLNESKIREKKVLSLLDAV
PQTEWNQSYVLHLCDKAKFHQVCGLIHTIRHDYLAALDSYMKDVDEPVHAFSFIDRVLLQ
LSETESTAFRSAIISRIPELVTLSRECTFCLVSYHLSNDREHVLSKLRSTPRSLFLYLKT
LFEVYLSGTLDFSCVKVENVIDGSWGRQNNWENSLNSYLARVQEFPKFICNKPIEVTDDI
VELYLELLCKFEPDSVLKFLDTFENYRVDQCLQLCQEYGVVDASAFLLERVGDVGSALLL
TLSGLNDKFMMLDSALKSMTSGVAKPAHKYLAAASKLKEVQDITKILHACIGLCQRNSPR
LDPEESESLWFHLLDSFCKPVLMSQGNYKSGILTQSSSDKDNTEVNAITWRVHDTQKYAP
ILKGLFSQFVKEVVEGMIGYVRLLSIMTKFLADNGSQEFGDFKLTILGMLGTYSFERRIL
DTAKCLIEDDTFYITSLLKKGASKGYAPRNLQCCICNCSFKSSSSSGIRVFNCGHATHLH
CEVQDNLTSSQCSGGCPICVPKKKIQKLKGMVEQGLVSALPSTALRAQGASNLHSHELDV
FDNSTGPQISRFEILNNLKKNQRLILNDTMPQLRLAPPAVYHEKVNKRTHFSSRASNGGM
DAENSSRTKQLQDLKVKGSRFPLKSKIFGKEKSRVN
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaatcactcaacctcaacgttttcgacaccggaaaatcaggagctcgatctg
gattcctttctccggcgacataacgctgcatcatcatcttcctcagatgaagaagaggaa
caaattcatcgtggttccgacattcttcttcgtactgttgatgatatccttaacgaatca
tcttccgattccgaaaatcctgttagttcggtatcttctacgttatctcatactaaaacc
ctaatttcgagtgataaacagtttaattctactcaatttaagtctaatttatttcaacga
ataaaatccgaggatttttctcggaaactgcctatttcgtcgcaaaactcgcgaaattcg
tcgattttcagcggcggatttagtcgaaaacctggcgcggcgcttgcggcagctgctgct
gcgtcgaaaagtgttcggaggaggacgctgagtgtgaatttggaaggaagagtttcggat
ttagatgaattgtcagggttatttaaggaagatgtgaaatctgagggttgtgatagtaat
cttagtgtaaatgaggtagtagaagaggtcattgaggagagacaaaagaatgcgattgat
ttttgtgaaagtattgatgaaaaagtaggcagtgagttagagaatgacgagtttgcgaat
gtagtgttgaattcaagtgtcgaaaaagaggagacgatttctgcatccaaaagcattgga
gttttggattttggagatggggagaaaattgagaatgaggattttgctgacgatgagcat
aaggtgggggaggcaaggacaggtgatgaatctttagagtatgataatgagaaagaggtg
gagcaagattcgacacgagaattacaagaagctgagatttgtgctgttgttttagatagt
catgaattgagtaccgatagggatggggtatgttcgattggtgatgatgttaatgatctt
gttgaggatactatcgcagaattagagactcagattgatagtataatggtggaggaggaa
aagttgctccctccaaagaaggcactagaattagccgaggacattgagataaagcaagct
tcaactggtcaggattgggaggagggggcagctgcacagcctatgaggcttgaaggtgcg
cgtagaagttcaacagtgctggggtattttgatgttaatgctgataattctataagtcga
actatcaagtcacaggcgtttgttcgtgattatggtaacccacaggctattgcggtgcat
ctcaattacattgctttgggtatgtcaaagggcgttgttgttgttgtgcctagtaaatat
tctgctcagcatccagataacatagatctttcaaagacgatgttccttggtatgcaagca
gatcgatcccaagctcctgttatgtctatttgtttcaatcagcaaggtgacctgctcttg
gcaggctatggtgatggtcatattgtattgtggaatgtacgtaggggaacagtggtgaag
gttataactggagggcataaggcacccgttgttcacacattatttctcgggcaggatcct
caagttactcgacaatttaaagcaattactggtgatagtaaaggattggttcaattacat
gatttctcctctgcaatgcttggactctctgtaactacaaaatgtcttcttgatggtgaa
aaaacaagcacagtgttgagtgcttcacctctactacctgatgaattttccttctctggg
accaccacaagctccgctagcagtgtaggcagtgtcatgggtgctgtggttgggggagcg
acttcttggaaactctttactgaaggttcctccttgtctgaagaaggtgtggtcatattt
gtcacccatcagactgctctggtggtgaggcttagtcctatcttggaagtatatgtacag
tttcctaagctagaaggtgctcgggagggttcaattccatatactgcttggaaatgtaca
acacagtcacggggtccctcctcagaaagtacaaaaagtgaagcactggaaaggatctca
ttgcttgcattagcatgggaccggaaagttcaagtcactaaattagtgaaatctgagctt
aaagagtctggaaaggcagaacctaaagaaagtggccagtggatgcttaaagtgtgtgga
aactggacacttgaaagtccagctgtaggtttggcgtggcttgatgatcagatgctggtg
attcttacattatctggccaactttgcttgtttacaagagatgggacttttattcaccaa
actagctatgggattgatggaaatggaggagatgatcttatttcttatcacacttatttt
accaatgtgtttggcaaccctgagaaatcttatcagaatagtctatatgtcagaggagca
tctgtttacatacttgctcctacacatgttgttatttgtcgttttcttttgtggcgggag
cgtattgaggtgttgcgaaatgcaggcgactggatgggtgccttcaacatggcaatgaca
ttgtatgacggtcaggcccatggtgttattgaccttcccagagacttgcatgctatacaa
gaggctattatgccctatctggtggaattgctcttttcatacgtagatgaggttttttcc
tacatttccgtagcttgtttcaaccagattgaaaaagaagttgatggttccgtgactgtg
agcaactcagcatcttctgaaataaaggagcaattcacccgggttggtggagtagcagtt
gaattttgtgttcatatcaaacggactgatattctttttaatgaaatatattcaaaattc
gtatcagttcagcatagagatacatttttggagcttctagagccatatatattaaaggat
atgcttggatcacttcctcctgagattatgcaagcattggtggagcactacaataggaaa
ggatggttgcagcgtgtagagcaatgtgttcttcacatggatatttcatctttggacttt
aatcaggttgttaggttatgtcgggagaatggattgtatggtgccttgatttaccttttc
aacaaaggcttagatgatttcaagacacctttggaggaacttttgagtgtgttgagaaat
cacggaagaggtgccgcttgtgctgctgttgggtatcgtatgctggtttatctgaagtac
tgcttttcaggcctttcttttcctccaggacatggaaaactcccttttgagcggttgcct
tctcttaggatggagcttttgcaatttttgctgcaagattctggtggtcccaagtcacag
acaggtgcaagcttaacttcaaccggagcttacctacacttgcactatcttttagagttg
gacacagagtctacattagatgttttaaggatagcctttgtggaggatgatggtttcagg
gatgcaactgttgataatctaaaagataatgacttaaacgctgatgaccagaatatgcta
gttcagaaaactgttgacgctctcgtaattgttctcgatatagatatttctcaatctgtc
aggtcttgtggcagtgatgatactgccaaggtagtatggccttcaaagaaagatataggt
catctcattgagtttgttgcaagttatgttgcatctaaaagagctgatgtatctaagagt
gtcttgagccaaatattagagtaccttacttcagagaatcatattgtattaaatgagtgt
gagcagctaaatgaatctaagataagggagaaaaaagtactttctctgttggacgcagtt
cctcaaacagagtggaatcaatcctatgtcttgcatttgtgtgataaagcaaagtttcac
caggtttgtggcttgatccacaccattagacacgattatcttgctgcgttggatagctat
atgaaggatgtggatgaaccagttcatgcattttcatttattgacagagtattgctgcag
ctaagtgaaactgaatctacagctttccgatcagcaatcatttcccggattcctgagcta
gttactttgagcagagaatgcacattttgcttggtcagttatcacttgagcaatgacagg
gagcatgttctttccaaacttcgatcaactcctagaagcctcttcctttatttgaagact
ctttttgaagtttatctttcaggaaccctcgatttttcttgtgtaaaggtggaaaatgtt
attgatggttcctggggcagacagaataattgggaaaatagcttgaattcttacctggca
agagttcaggaatttccaaagtttatatgtaacaaacctatcgaagtgactgatgacatt
gttgaactttatcttgagctattatgtaaatttgaaccagattcagttctcaagttcctg
gacacatttgaaaattatagagttgatcaatgtttgcaattatgccaagaatatggcgtg
gtagatgcttctgcctttcttttagaaagggtgggtgatgttggaagcgctcttctgctt
accctttctggactcaatgataagttcatgatgcttgattcggctttgaaaagtatgact
tcaggcgttgccaaacctgcacataaatatcttgctgctgcttcaaagctgaaagaggta
caggatattacaaaaatactacatgcatgtataggcctttgccaacgcaattcacctcgt
ctggatccggaggagtctgaatcactgtggttccatttactagactcgttttgtaaacct
gtacttatgtcccaaggtaactataaaagtggcatactaactcagtcttcaagcgataag
gataacacagaggttaatgccatcacatggagggttcatgatacccagaaatatgctcca
attttgaagggattattttcacaatttgttaaggaagttgttgaggggatgataggatat
gttcgtcttctgtctatcatgacaaaatttctggcagataatggaagtcaagaatttggt
gacttcaagctgactattttgggaatgctaggaacatacagctttgagaggcgaattctg
gatactgccaaatgcttgatagaggatgatacattctatatcacgagcttactcaaaaaa
ggagcctctaagggatatgcccctcgaaatcttcagtgttgcatttgtaactgttccttt
aagagttcatctagctcgggcattcgggtatttaattgtggtcatgcaacccatcttcat
tgcgaagttcaggataatttaacgtcaagtcaatgttctggtggatgtccaatatgtgtg
cctaagaaaaagatccagaaattgaaaggtatggtagagcaagggttagtcagtgcattg
ccatctactgcactccgagcacaaggggcaagtaatcttcactcgcatgaacttgatgtg
ttcgataattctactggccctcaaatttcaagatttgaaatcttgaataatctcaaaaag
aaccagagactgattttaaatgatacgatgccacagctgaggctagctcctccggctgtt
tatcatgagaaagtaaacaaaagaactcatttttcttctagagcaagtaatggaggtatg
gatgctgaaaactctagtagaactaagcaactccaagatctcaaagtaaaaggttctcgg
tttccattaaaatcaaaaatatttggcaaggaaaaatctcgtgtaaattaa
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integrated database retrieval system
