Amaranthus tricolor (tampala): 130811227
Help
Entry
130811227 CDS
T09367
Name
(RefSeq) cryptochrome-1-like isoform X1
KO
K12118
cryptochrome 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
130811227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
130811227
NCBI-ProteinID:
XP_057533419
LinkDB
All DBs
Position
4:26808150..26815370
Genome browser
AA seq
689 aa
AA seq
DB search
MEGGSCSIVWFRRDLRVEDNPALTAGVRAGAVFCVFIWAPEEEGHYYPGRVSRWWLKHSL
AQLDSSLRSLGTCLITKRSTDSVSTLLDVVKSTGASQLFFNHLYDPLSLVRDHRAKEVLT
AHGILVRSFNADLLYEPWEVVDERGQPFTTFTSFWNRCLSMPFDPEAPLLPPKRIISGDV
SKCPSDTLVFEDDTEKGSNALLARAWSPGWSSADKALTTFINGALIEYSKNRRKADSATT
SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNTAGDEGCNLFLKSIGLREYSRYMSFNH
PYSHEKPLLGHLKFFPWVVDESYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDSREFDRIDNPQFEGYKFD
PNGEYVRRWLPELARLPTEWIHHPWKAPESVLHAAGIELGSNYPLPIVEIDAAKVRLQEA
LASMWEQEAAYRAAIENGTEEGLGDSAEEPIEFPQDLRMDIDREPVRNSNNQNDVNRRHL
DQMVPSITSTLFRVEDYETSSEVQQYSVEDGRAEVPRNFNADQERGTRNEGVMPTRSPRR
YNTIPPQQVNLNVEESTAESSSTTGGSRSSGVVPVWSPSSSTFADQYVNDEAVGPNSSFV
QRNPQSHELVNWRRLSQTGTLPENKHGKQ
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaagggggaagttgtagtatagtatggtttagaagagatttaagggtagaagataat
cctgcacttacagcaggagtaagagcaggggctgttttttgtgttttcatatgggcacct
gaagaagaaggtcattattaccctggaagagtttcaagatggtggcttaaacatagttta
gctcagcttgattcttctttaagaagtcttggtacttgtcttattactaagagatctact
gatagtgtttccactctacttgatgttgttaaatctactggtgcttcccagctcttcttc
aatcatttatatgatcctttgtcgttggttagagatcatcgtgcaaaggaagtcttaact
gcacatggtatattagttcgctctttcaatgcggatttgttgtatgaaccttgggaagtt
gttgatgagagaggccagccatttactacctttacatctttctggaatagatgccttagc
atgccttttgatcccgaggctccactccttccacctaaaagaataatttccggagatgtg
tcgaagtgcccatcagacacattagtctttgaagatgatacagaaaagggcagcaatgca
ttacttgctcgagcctggtcgcctggctggagcagtgctgataaggctcttacaactttc
atcaacggagcattaattgaatactcgaagaatcggagaaaggctgatagtgcaacaacc
tccttcctttcgcctcacttgcatttcggagaggtcagtgttcgaaaagtcttccatttg
gttcgtatcaagcaggtctcgtgggcaaatgaagggaacactgctggtgatgaaggttgc
aatttattcctcaaatctattggtctgagagaatattcaaggtatatgagcttcaaccat
ccatacagccacgagaaacctttactcgggcacctaaaatttttcccttgggtggtggac
gaaagctattttaaggcttggagacaaggaagaacaggttatcctttggttgatgctggc
atgagagagttatgggctactggttggctacatgataggatacgggttgttgtctcgagc
ttctttgtgaaggttcttcaacttccgtggaggtggggcatgaaatacttttgggatacc
cttttggatgcagatcttgaaagcgacgcccttggctggcaatatatttcgggtacccta
cctgatagccgtgagtttgacagaattgataatcctcagtttgaaggctacaagtttgat
cctaacggagaatatgtaaggcgatggcttcctgaacttgcaaggctaccaaccgaatgg
atccatcacccttggaaagccccagaatctgtattacacgctgcagggatagagttagga
tcaaattaccctcttcccatcgtagaaattgatgctgcaaaagtaagactccaagaagca
cttgctagcatgtgggagcaggaagcagcgtacagagctgcaatcgaaaatgggacagag
gaagggcttggtgattcagccgaagaacccatcgaatttcctcaagatttacggatggat
attgatcgtgaacctgtgaggaatagtaataaccaaaatgatgtgaaccggcgtcatcta
gaccaaatggtgcctagcatcacctcgaccttgtttagggttgaagattacgaaacttct
tcagaagttcagcagtattcggtggaagatgggagagcagaagtccctagaaattttaac
gcggatcaggaaagagggacacgaaacgaaggagttatgcctactcgtagtcctagaaga
tataacacgattccaccacagcaggtaaacctgaatgtagaggagtctacagccgaatca
tcaagtacaactggtggtagccgaagtagtggggttgttcctgtttggtccccctcgagt
tctacctttgcggatcagtatgtaaatgatgaagcagtgggacccaattcctcgttcgtg
cagaggaatccacagtctcatgagctcgtgaactggagacgactttctcaaactgggaca
ttgccggaaaacaaacatggaaaacagtaa
DBGET
integrated database retrieval system
