KEGG   Amaranthus tricolor (tampala): 130811397
Entry
130811397         CDS       T09367                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130811397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130811397
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     130811397
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     130811397
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 130811397
NCBI-ProteinID: XP_057533675
LinkDB
Position
4:complement(1312372..1317712)
AA seq 241 aa
MEFISPEGLRLDGRRPLEMRQLRAEIGVVSKADGSAVFEMGNTKVIAAVYGPREVENKSQ
QINDQALVRCEYTMANFSTGDRVRKPKGDRRSTEISMVIRQTMESCIMTNLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMCDLVTSCSAGYLCTTPLLDLNYVEDSAGGPD
ITVGLLPKLDKVTLLQMDSKLPLDTFESVMQLAIEGCKAIANYVREVLLENTKQQEYRCG
L
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagtttatcagccctgaaggtctccgcttagatggtcgtcgtcctttagagatgagg
cagctacgtgcagagattggtgttgtttctaaagctgatggttcagctgtttttgagatg
ggcaacactaaagttattgccgccgtttatggtcctagagaggttgaaaacaaatcgcag
cagatcaacgatcaggcattggtgcgctgcgagtacactatggccaatttcagtactgga
gatcgtgtaaggaaaccaaaaggagacaggcggtctacagaaatatcaatggttattcgg
caaaccatggagtcttgcataatgacaaacttaatgcctcgttcgcagattgacattttc
gttcaggtcctacaagctgatggaggaactagatctgcatgcataaatgcagctacttta
gctctagccgatgccggcattccaatgtgtgatctggttacatcctgcagtgctggctat
ctttgtaccacacctctccttgatctaaactatgttgaagatagtgctggtggtccagat
attactgtgggacttcttcctaaactggacaaagttacacttctccagatggactcaaaa
ttgccattggatacatttgaaagtgtcatgcagcttgccattgaaggttgcaaggccatt
gccaattacgttcgagaagtattgcttgagaacactaagcagcaggagtatcgatgtggt
ctatag

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