Amaranthus tricolor (tampala): 130811414
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Entry
130811414 CDS
T09367
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130811414
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130811414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR35_TULP_N
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Rapsyn_N
Beta-prop_IP5PC_F
ANAPC3
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
130811414
NCBI-ProteinID:
XP_057533697
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Position
4:complement(25472783..25501460)
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AA seq
755 aa
AA seq
DB search
MDSYGFHDGNISNIIYNRTIDFRHDVKHTLQMHSSMIRRLSLERELEGHTGCVNTIAWNS
TGSLLISGSDDTRINVWKYIGHKLLTSVDTGHSSNIFCTKFMPETSDEIVASGAGDAEVR
VFNLSCISGGRVEDTPVTPCAHFQCHTRRVKKLAVEVGNPNVIWSASEDGTLRQHDFREG
SSCPPAGSSNQECRSVLLDLRGASKRSLAEPPKQTLQLKSFDISATRPHLLLVGGSDAFS
RLYDRRMLPPLSSCQIKNSPPPCVSYFCPIHLSERGRSRLHLTHVTFSLDGDEILMSYSG
EHVYLMDLNQGSGNAMRYTCGDLVKHWSFLPINGVEITSAKNCSTVQLCKSKKLLEFAET
CLKEGTEYYYGIEACNEVLDGGYRIDLQLKHACLCTRAALLLKRKWKNDTHMAIRDLSQA
RKINLSSFKVYFCMSEALSQLGKHKEALDFALAAQCLDHSNAEVSERVECIRKQLSAAEA
EKSKKSNDVGSKSEPYADRLISLGDIFYRSEANSDTSQEGPRSERDDSDYDEELELDFET
SMSGDEGRDAEQNVLHGSLNVRIHRRADSAREASASNGSCRSPSSYKKESTSYQIICALQ
PEAVIDMKQRYVGHCNVGTDIKQANFLGQNGDYIASGSDDGRWFIWEKKTGRLVKMLCGD
EAVVNCVQSHPFDSVVATSGIDSTIKIWTPIAPVPSMVAGGSAGPNTFNVLEAMEGNQRS
LCRARETTLPFELLERFHMHDFTEGTLHPFECAQS
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggattcctatggctttcatgatggtaacatttccaatatcatttacaaccgtacaatc
gactttcgccatgatgtgaaacatacattacaaatgcactcatccatgatacggaggttg
tcgctcgaaagggaattggagggacacacaggttgtgtaaatacgattgcatggaactca
actggctcactcctgatttccggctcagatgacacgagaattaatgtttggaagtacatt
ggtcataagcttttgactagcgttgatacgggtcattcttccaacatattttgcacgaaa
tttatgcctgagacttctgatgagattgtggcatctggggctggtgatgcagaggttcgt
gtgtttaatttatcttgcataagtggaggacgtgttgaagacactcctgttactccttgt
gctcattttcagtgtcacactaggagagtgaaaaaattagcggttgaggttggaaatcct
aatgttatctggagtgctagtgaagatggaaccttaaggcaacacgattttcgtgaaggt
tcttcatgtcctcctgctggatcctccaatcaagaatgtcgcagtgtactgcttgactta
cgtggtgcttcaaaaaggtccttggctgaaccacccaaacaaacacttcaattgaagtcc
tttgatatcagtgctacaagaccccatctgcttcttgtagggggaagtgatgcattttct
cgtttatacgatagaaggatgctgcctcctctgtcgtcctgccagataaaaaattcgcca
cctccgtgtgttagctatttctgcccaatacatctttctgagcggggacgttcaagattg
catctgactcatgtaacatttagtctggatggcgacgaaattcttatgagttatagtgga
gaacatgtctatttgatggatctaaaccaaggcagtggaaatgctatgcggtacacatgt
ggagatttggtaaagcattggagctttcttcctattaatggagtagaaatcacctcagca
aaaaactgttcgactgtgcagctttgcaaaagcaaaaaacttttggaatttgcagaaaca
tgcttaaaagaggggacagagtattattatggaattgaagcatgcaatgaagttcttgat
ggaggttatagaattgatctccagcttaagcatgcttgtctttgtacacgtgctgccttg
cttcttaagaggaagtggaaaaatgacactcacatggctataagggatttaagtcaagct
cgaaaaattaatttatcttcatttaaagtatacttctgcatgtctgaagctttatctcag
ttaggcaagcataaagaagccctagattttgctctagcagctcaatgtctggatcattca
aatgctgaagtctcagaaagggtggaatgtattcgaaagcagctttcagcagccgaagct
gagaagagcaagaagtcaaatgatgtaggatccaagtctgaaccatatgctgacagactg
atatcattaggtgacatcttttaccgctcagaggctaacagtgatacttcacaagagggt
cctagatccgagagagatgactctgactatgatgaagaattggagttggattttgaaaca
tcaatgtcaggtgatgagggtcgtgatgctgaacagaatgtccttcatggaagtttgaat
gtgagaattcaccgaagagctgattcagctagagaagccagtgcttcaaatggttcctgc
agatctccatcttcttataaaaaagagagcacgagttatcagattatttgtgcattgcag
ccagaagctgtcattgatatgaaacagagatatgttggtcactgcaatgtaggaactgac
ataaaacaagctaattttttgggccagaatggtgattatattgcaagtggaagtgatgat
ggaagatggtttatttgggaaaagaaaactggaagactggtcaaaatgctctgtggagat
gaagctgtggttaactgtgtccaatcccatccatttgattctgttgtggctaccagtgga
atagatagtacaattaagatttggactcctattgctccagtcccctctatggtagctggt
ggctcagcaggtcccaatacattcaatgtcttggaagcgatggaaggcaatcaacgtagc
ttgtgtcgggcacgtgaaactactctgccctttgagctgttggagaggttccacatgcat
gattttactgaaggaacgttacatccttttgagtgtgcgcagagctaa
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