Amaranthus tricolor (tampala): 130811537
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Entry
130811537 CDS
T09367
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130811537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130811537
03041 Spliceosome [BR:
atri03041
]
130811537
03032 DNA replication proteins [BR:
atri03032
]
130811537
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
130811537
Spliceosome [BR:
atri03041
]
Complex A
U1 snRNP components
Sm proteins
130811537
U2 snRNP components
130811537
Complex B
U1 snRNP components
130811537
U4/U6.U5 tri-snRNP components
130811537
Complex C
U2 snRNP components
130811537
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
130811537
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
130811537
NCBI-ProteinID:
XP_057533845
LinkDB
All DBs
Position
4:22933771..22937667
Genome browser
AA seq
89 aa
AA seq
DB search
MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL
GEILIRCNNVMYLRGVPEDEEIEDADRDD
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atggctactgtgcctgttaaccctaaacctttcttgaacaatttgactggaaagccagtt
atagtgaaactgaagtggggaatggaatacaaaggttatcttgtgtcagttgatggctac
atgaacctacagttggcaaacacggaagaatatattgagggccagaaaactggagacctt
ggggagattctcatcagatgcaacaatgtcatgtatcttcgtggagttcctgaggatgaa
gagatagaggatgctgacagagacgactga
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