Amaranthus tricolor (tampala): 130812341
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Entry
130812341 CDS
T09367
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03440
Homologous recombination
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130812341
03460 Fanconi anemia pathway
130812341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atri03032
]
130812341
03400 DNA repair and recombination proteins [BR:
atri03400
]
130812341
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130812341
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
130812341
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
130812341
Bloom's syndrome complex (BTR)
130812341
FA (Fanconi anemia) pathway
130812341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-GeneID:
130812341
NCBI-ProteinID:
XP_057533955
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All DBs
Position
1:complement(6088739..6102128)
Genome browser
AA seq
1255 aa
AA seq
DB search
MSDKNLFAGKELKKKLPKVNWAEHLKSHNNFATQNKFLTSNFLYSLPTQKPPSEGRMMSF
QIQSIDKSLVEQAWKALSSLQLYRRNYVRPGQTVQPVKNISASHIGGRSVVPESLHDSSV
KLSVNPQHNQISLSNNKVHDPTRYYVAPAPMCQAVEVGKNISQNQSDATVVRNYHTTVSE
GSWHLNAKSTSDGKGSDEAIIDAMNDDEILENIDVDQIIMEHYQSNSQPKPGTARNDEAP
LPPELSCNCSHGCKLGLCPDGANHLQEMKDMLIVISNELLDNLDLTSERMEKLRQDRLQL
NKQIQLLETQIRNSTINVERHNSHLSASSVNVNSFYHETPQATFRSMNGYDTPQATFRSM
NGYDTPQANFNSMNGYSTPHTNFNLMYGCDTPQANFKPMNGYDTPHASGFVNIPMRLDNQ
FSNVDESSGYNGCNLSSISFSVTGRSDFLSAPMERESYKPRVADVNYIEGSNDMKWSSRD
FPWTRKLEIENKKVFGNHSFRPNQREVINATMSGHDVFVLMPTGGGKSLTYQLPALICPG
VTLVVSPLVSLIQDQIMHLLQANIPAAYLSANMEWGDQQDILRELCSENCKYKLLYVTPE
KIAKSDYFLRHLEKLYSLDLLARVVIDEAHCVSQWGHDFRPDYQGLGILKQKFPTTPVLA
LTATATAVVKEDVVQALGLANCIIFRQSFNRPNLSYSVIPKTKKCVEEIDSFIRENHNDE
CGIIYCLSRMDCEKVAEQLQVYGHKAAFYHASMEAAQRAYVQNQWSRDEINIICATVAFG
MGINKPDVRFVIHHSIPKSIEGYHQECGRSGRDGQRSSCLLFYSYSDYIRVKHMLSQGTI
EQSPFTSTHNRMNSTNSGGIIETNMENLLRMVSYCENEVDCRRLLQLAHFGENFDPSDCK
KTCDNCSKMRNSIEKDVTQVAMQLVELVKSTKQQFSSAHILEVFKGSLSQYVKKHKHNTL
KLHGAGKNLAKGEASRVLRHLVVENILYEEVKKSDLYGSVSSVLKVNECKYRNLCGNGKI
ILRFPSTTKASALKLTKAEATPGKSMFCTGKASPPESHFLKSESEADLDFSAKLFNELKK
LRTVLMKESGERVMAYHIFGNTTLILISKRVPRTKEELLEINGVGNIKVNKYGDRVLETI
EAFIKQYKKTDKNKSSSSHSSDSIKRRREAAEVSNRTSNDYEDFTESTARSKKRAVKSKK
TSEIKPVEIDEFNECMDDDLDFDVSVFEYQAGSLPKKETNANGRKLPTWSQHGKQ
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaaatttatttgcgggaaaggaattgaagaagaagcttcctaaagttaat
tgggcagagcatctgaaatcacataataattttgctacgcaaaataagttccttacctca
aattttctttattcattaccgacccaaaaaccgcctagtgaagggaggatgatgagcttt
cagattcaaagtattgacaaatcactggtggaacaggcatggaaagctctttcaagcctt
caactatatcgcagaaactatgtcaggcctgggcaaaccgttcagccagtgaagaatata
agtgcctctcatattggtggaagaagtgtggtgccagagagtttacatgatagcagtgtg
aagctttctgtgaatccacaacataatcaaattagtttaagcaacaataaggtgcatgat
cccacaaggtattatgttgccccagctccaatgtgtcaggctgttgaagttgggaaaaat
attagccaaaatcaaagtgatgcgacggttgtgcgcaactatcatacaacagtttccgaa
ggctcatggcatcttaatgccaagtccacaagtgatggaaaagggtcagatgaggcaatt
attgatgccatgaatgatgatgaaatactcgagaatattgatgttgaccaaataatcatg
gagcactatcagtcaaatagtcagcctaaacctggtactgcaagaaatgatgaagcacct
ttgcctccagaattgtcttgtaattgcagtcacggatgtaagctgggtctctgtccagat
ggggccaatcatctgcaagagatgaaagacatgttaattgtcatatcaaatgaattgctt
gacaatttagatttaacttctgagaggatggaaaagcttcgccaggacaggttgcagcta
aataagcaaattcagttgttggagactcaaatccgcaattccactattaatgttgagaga
cataattcacatctttctgcatcttcagtaaatgtaaatagtttttaccatgaaacgcct
caggccacctttcggtcaatgaatggatatgatacacctcaggcaacctttcggtcaatg
aatggatatgatacacctcaggcaaactttaattcgatgaatggatacagtacacctcac
acaaactttaatctgatgtatggttgcgatacacctcaagctaactttaagccaatgaat
ggatatgatacacctcatgcatctggctttgtgaatattccaatgagattagacaaccag
ttcagcaacgttgatgagtcaagtggctataatggttgtaacttatcatctatttcattc
tctgttaccgggaggagtgattttttatcagctcctatggagagagagtcatataaacca
agggttgctgatgttaattacattgaaggttcaaatgacatgaaatggagtagcagagat
tttccttggaccaggaagttagagattgaaaacaaaaaggtgtttggtaaccattcattt
cgaccgaaccaaagggaagttattaatgcaactatgagtggtcacgatgtttttgtgcta
atgcctactgggggaggaaaaagtctgacatatcagcttccagcattgatctgtccagga
gtaactctagtagtatcgccacttgtttctctcatccaagaccagattatgcatcttttg
caggcaaatataccagctgcttacttaagtgccaacatggaatggggcgatcaacaagat
attctcagagaactttgttcagagaattgcaaatacaagcttttatatgttacgccagaa
aaaattgccaaaagtgactatttcctgcggcatttggagaagctatattctcttgatttg
cttgccagggttgttattgacgaagctcattgtgtcagtcaatggggacatgatttcagg
cctgattatcagggtcttggcatcttgaaacagaagtttccaaccactccagtgctggct
ttgactgctactgcaacagctgttgtcaaggaagatgttgtgcaagcgcttggtctagct
aattgcataattttccgtcaaagttttaaccgtccaaatttgtcgtattcagttatcccc
aaaactaaaaagtgtgtggaggaaattgacagttttattagagaaaatcataatgatgaa
tgtggtatcatttattgcctttcgagaatggattgtgaaaaggttgctgaacagctacag
gtgtatgggcataaagcagctttttaccatgccagtatggaagctgctcaacgtgcttat
gttcagaatcaatggagcagagatgaaattaatataatatgtgcaactgtggcttttgga
atgggcatcaacaaaccagatgttcgatttgtgattcatcattccatcccaaaatctatt
gaaggctatcatcaggaatgtggtcgttcgggtagagatggtcaacgttcgtcttgtttg
ctgttctacagttacagtgactatattcgtgtcaagcacatgttaagccaagggactatt
gagcagagcccattcacttctacacataatcgtatgaattcgacaaattctggggggatt
attgaaactaacatggagaatcttctacgcatggttagctattgtgaaaacgaagttgat
tgtagacgtcttcttcagctagctcattttggagaaaactttgatccttcagactgtaaa
aaaacgtgtgacaattgctctaagatgagaaattctattgagaaggatgtgacccaagtg
gctatgcaattggtggagctggtgaagtcaacaaagcaacaattctcctcagctcatatc
ttggaagttttcaagggctctttaagccaatatgtaaagaagcacaagcataatactctc
aaacttcacggagctggaaaaaatttggcaaagggtgaagcatctcgtgttctccgtcac
ctcgttgttgagaacattctttatgaagaggtcaaaaaaagtgatctctatggatctgtc
tcatcagttctgaaggtcaatgaatgcaagtacagaaatctttgtggcaatggaaagata
attttgagattcccttcgaccaccaaagcttcagcgttaaaattaactaaagctgaggca
actccgggaaagtccatgttctgtactgggaaagcaagccctccagaaagccacttttta
aaatctgaatcagaagctgacttggatttttcagccaaattatttaatgagctcaaaaag
ctaagaactgtcctcatgaaagaaagtggggaaagggtcatggcatatcacatatttggg
aatacgacgttgattctgatcagcaagagggtacctcgaactaaagaggaattactagaa
ataaatggcgttggcaacataaaggtaaacaagtatggtgatcgcgtgttggaaactatt
gaagctttcatcaagcagtacaagaagacggataagaacaaaagcagtagtagtcacagt
tcagattcaataaaaaggagaagagaggcagctgaggtttcaaatcgaacctctaatgac
tatgaagacttcacagaaagcacagcgagatctaaaaaacgagccgtcaaatccaaaaaa
acttctgaaatcaaacccgtagagattgatgagttcaatgaatgtatggacgatgatctt
gattttgatgtctcagtttttgagtatcaggctgggtcgctgccaaaaaaggaaacaaat
gccaacggaagaaagctgccaacatggtcgcaacatgggaaacagtaa
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