Amaranthus tricolor (tampala): 130812357
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Entry
130812357 CDS
T09367
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130812357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130812357
Spliceosome [BR:
atri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130812357
Complex C
U5 SnRNP specific factors
130812357
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
130812357
NCBI-ProteinID:
XP_057533957
LinkDB
All DBs
Position
1:complement(6113078..6123870)
Genome browser
AA seq
2358 aa
AA seq
DB search
MWNGNNPMAPPPAPGTSIPPPPAMQPSYTVLQPPPQQPPQQESPAEAEARLEEKARKWMQ
LNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAV
YKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRR
HFKRMRFPPFDDEEPPLDYADNVLDVDPLEPIQLELDEEEDSAVYTWFFDHKPLVKTKLI
NGPSYRRWHLSLPIMATLYRFAGQLLSDMVDRNYFYLFDMESFFTAKALNMCIPGGPKFE
PLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYKIAFPHLYNNRPRKVRLGIYHTPMVMYI
KTEDPDLPAFYYDPLIHPITSAPKDRRDKKAYEEEDDDEFELPEGVEPLLIDTQLYTDTT
AAGISLLCAPRPFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNE
LHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHL
DYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGL
QYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWL
FFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMP
EGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKAKADWWTNVAHYNR
ERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLE
SRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEAL
SRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPN
WVKPADTEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRLLR
LILDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRA
SEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHP
DPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVY
SKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAVAFLRVDDEHM
KVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQT
RIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRSGM
SHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIP
RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQA
LGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLW
WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVL
DQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAETKDVFDQKAS
NKYWIDVQLRWGDYDSHDIERYTRAKFLDYTTDNMSIYPSPMGVMIGLDLAYNLHSAFGN
WFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQII
WFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLA
KWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL
KIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPD
RTVITEAHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEIT
PPSQQRQQIAEIEKQAKASSQLQAVTTKTVNVHGEELIVTTTSPYEQAAFGSKTDWRVRA
ISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYGISPPDNP
QVKEIRCIAMPPQWGTHQHVNLPSQLPEHDFLNDLEPLGWMHTQPNELPQLSPQDVTSHA
RVLESNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRANKDTGSNPHGYLPTHYE
KVQMLLSDRFLGFYMIPDSGPWNYNFMGVKHTVSMKYGVKLGTPKEYYHEEHRPTHYLEF
SNMEDVDTVEVDREDTYT
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggtaataatcctatggcgccaccgccggcgccaggaacctcgatacctccg
ccgccggcgatgcaaccttcgtacacggtgcttcaaccacctccgcaacaaccaccgcag
caggaatctcctgctgaagctgaagctaggcttgaagagaaagcaaggaaatggatgcag
cttaattctaaacgttatggtgataagcggaagtttggatttgttgaaactcagaaggaa
gatatgcctcctgaacatgttcgtaagattattcgtgatcatggtgacatgtcatcgaag
aaataccgtcatgataagcgcgtataccttggggccttgaagtttgttccccatgctgtc
tacaagcttcttgagaatatgccaatgccttgggaacaggttcgtgatgtcaaagttcta
tatcatattactggagcaatcacatttgtaaatgaaataccgtgggttgttgaacctatt
tatttggctcaatggggtacaatgtggattatgatgagaagagaaaagagagaccgtcgg
cacttcaaaagaatgcggtttccaccttttgatgatgaggaacctccgttggattatgct
gataatgttttagatgtggatccgttggaaccaattcaactagagttggatgaggaagaa
gattctgctgtgtatacgtggttctttgatcacaaaccacttgtaaaaacgaaacttatc
aatggtccaagttatagaagatggcatctttcactgcctataatggcaactctatatagg
tttgctggacaattgctttctgatatggtggaccggaattacttctatttgttcgacatg
gaatcatttttcactgcaaaagctttgaacatgtgcatacctggtggcccaaagtttgag
cccttgtaccgtgacatggagaagggcgatgaggactggaacgagtttaatgacatcaac
aaactgattatccggtcaccacttcgtacagagtataaaatcgcttttccacatttgtac
aacaacagacccagaaaagtaaggcttggcatttaccacacaccgatggttatgtatata
aagacagaggaccccgatcttccggcgttttattatgacccattgattcacccaataacc
tctgctcccaaggaccgtcgggataagaaagcctatgaagaagaagacgatgatgagttt
gagctccctgaaggtgtagagcctttgctgattgacactcagctttatactgatactact
gctgctggtatatcattgctgtgtgctccaaggccttttaacatgaggtctggtcggaca
agacgtgctgaagatattcctcttgtttcagagtggtacaaggagcattgcccgccctca
tatcctgtcaaggttcgagtcagctatcagaagttgctgaaatgttttgtgctgaatgag
ctgcatcataggcctccaaaagctcaaaagaagaaacatctgtttagatctcttgcagct
accaagtttttccagagtactgaactcgattgggttgaagttggtctgcaggtttgcagg
caagggtacaacatgttgaatttgctgattcacaggaaaaatctgaactatctacatctt
gattataatttcaatctgaagcctgtgaagacacttactaccaaggaacgtaagaagtca
cgttttgggaatgcatttcacctgtgccgtgaaattctgcgtttgacaaagcttgtagtt
gatgccaatgtgcagttccgattgggtaatgttgatgcctttcaactagctgatggcttg
caatacatattttcacatgttggacagttgacaggaatgtaccgttacaagtacaggctc
atgagacagatcagaatgtgcaaggacttgaagcacctaatttattatcgtttcaatact
ggtccagttgggaagggacctggatgtggtttctgggcacctatgtggagggtctggcta
ttcttccttcgtggcatagtgccattgctggagaggtggctgggtaacctacttgctaga
cagtttgaaggtcgacattcaaaaggagtagccaaaacagttaccaagcagcgtgttgaa
agtcactttgatttggagcttcgagctgctgttatgcatgatgtcttggatgcaatgcca
gagggtattaagcaaaataaggcgagaaccatattgcagcatctgagtgaagcttggcgt
tgttggaaagcaaatatcccctggaaggttcctggtctgcctgtccctattgaaaatatg
atccttcgttatgtgaaggcaaaagcagattggtggactaatgttgctcattataaccgt
gaacgtattagaagaggtgccactgtagataagacagtttgtcgtaagaatcttgggagg
ttgactcgtttatggctgaaagcggagcaagaacgccaacacaattatttgaaggatgga
ccatatgttacacctgaagaagctgtggctatctacaccaccactgtgcattggctggaa
tctaggaagttctctcccataccgttcccacctctttcatataagcatgataccaaactt
cttattcttgctttggagaggttgaaagagtcatacagtgttgctgttagattaaaccag
cagcagagagaagaattgggtcttatcgagcaggcgtatgataacccgcatgaggcgttg
tcaagaatcaagcgacatctgctcactcagcgtgcctttaaagaagttggcattgagttt
atggatctatatagttatctcattcctgtttatgagattgagcctcttgaaaagattaca
gatgcttatcttgatcaatatctgtggtatgaaggggacaagaggcatttgttcccaaat
tgggtgaaaccggcagatactgaaccacctcctctcttggtgtacaaatggtgccaaggt
attaataacctgcaaggtatttgggatacaggtgatgggcagtgtgtggtgatgctgcag
actaaatttgaaaagttctttgagaagattgatctgactatgcttaacaggcttctgcgt
ttgattcttgatcacaatattgctgattacgttactgccaaaaacaatgtggttctgtct
tacaaggatatgagtcataccaactcttatggactgatacgtggtcttcagtttgcttcc
tttgttgtacaatattatggtcttgttcttgatcttcttcttctgggattgacccgagct
agtgaaattgctggtcccccacagatgccaaatgaattcatgactttctgggatacaaag
gttgaaactaggcatcctattcggctgtattctcgttatatagataaggtgcatatatta
tttcgcttcactcacgaagaggcccgagatcttattcagcggtatcttactgagcatcct
gatcccaataatgaaaatatggttggttacaacaacaagaagtgctggcccagagatgct
cgcatgaggctcatgaagcacgatgtcaatttgggtagaagtgttttctgggacatgaag
aatcgtcttccgcggagcatcacaactttagagtgggagaacagttttgtatcggtctac
agcaaggacaatcctaatttgctatttagtatgtgcgggtttgaagtgcggatcttgcct
aaaattaggatgacacaagaggcatttagcaacacgaaggatggggtctggaacttgcag
aatgagcagactaaagaacgaactgctgttgcgttcttgagggttgatgatgaacatatg
aaagtttttgagaatcgtgtgcgacagatccttatgtcttctggttctacaacctttact
aagattgtgaacaaatggaacactgccctcattggcctcatgacttacttccgtgaggcc
actgtgcatactcaggagctgttggacttgctggtgaagtgtgaaaacaaaattcaaact
cgtattaagattggattgaactccaaaatgcctagcaggtttcctcctgtcatcttttac
acaccgaaggaaattggaggtcttggaatgctgtcaatgggtcacattctgattccacaa
agtgaccttcgatacagtaaacagactgatgttggcgtgacacacttcaggagtggtatg
agccatgaagaggatcagttgattcctaatctttacagatacatccagccgtgggagagt
gagttcattgattcacagcgtgtttgggcagagtatgcactgaagaggcaagaagcacaa
tcccaaaatcggcgtctaaccttggaagatttggaagattcttgggatcgtggtatacct
cgaattaatactttgtttcagaaggatcgtcatactttggcatatgataaaggttggaga
gttcgcactgatttcaagcaatatcaagttttgaaacaaaatccattctggtggacacat
cagcggcatgacggaaaactttggaatttgaataattacagaactgatgtaattcaagca
cttggaggtgtagaaggaattctggagcatactttgttcaagggaacgtacttcccgaca
tgggagggtctcttttgggagaaagcatctggttttgaggagtccatgaagtataaaaaa
cttacaaatgctcaaagatctggtttgaaccagattcctaatcggaggttcacactctgg
tggtctcctactataaatcgtgccaatgtctatgtgggtttccaagtgcagcttgatttg
actggaatttttatgcatggaaaaattccaactttgaagatatctctcattcagatattc
cgtgctcacttatggcagaagatccatgaaagtgttgtcatggatctttgccaagttctg
gaccaggagctggatgctttagaaattgagacggtgcaaaaagaaacaatccatcctcgg
aaaagttataagatgaacagttcttgtgcagacatacttctgtttgctgctcataggtgg
ccaatgtcaaaaccaagtttggtggcagagacaaaagatgtatttgaccagaaggccagc
aataagtattggatagatgttcaactccgttggggagattatgattctcatgatattgag
cgatacaccagagcaaagttcttggactacacgacagataatatgtctatatatccgtcg
cccatgggtgttatgattggacttgatctggcttacaacttgcattcggcttttggtaac
tggttccctggatccaaacctctgcttgcccaagctatgaataaaatcatgaagtcaaat
cccgctctttatgttctgagagagcgtataaggaaaggtctgcagctgtactcttctgaa
cctactgagccttatttgtcatcccaaaattacggagagatattcagcaatcagattata
tggtttgttgacgatactaatgtctatcgtgtgacaattcataagacatttgaaggaaat
ctcacaacaaaaccgatcaatggtgctatattcatatttaatccccgaaccgggcaactg
tttctgaaggtcattcacacaagtgtgtgggccggacagaaacgtctgggtcagctggcc
aagtggaaaactgctgaagaagttgccgctcttgttcggtctttacctgttgaagaacaa
ccaaagcagattattgtgactcgtaaagggatgttggatcctttggaagtgcatttgctt
gatttcccaaacatagttatcaaaggaagtgaactgcagcttcctttccaagcctgctta
aagatagagaaatttggtgatctcattttaaaggctacggaaccacaaatggttttgttt
aacatttatgatgattggctgaagagtatatcttcttatactgcattctctcggctcatc
ctcatactccgggcacttcatgtgaacaatgaaaaagcaaagatgttgctgaagcctgat
aggactgttatcactgaagctcatcatatatggccttctctctctgatgatcaatggatg
aaggttgaggttgctttgagagatcttatactttctgattatgccaagaaaaacaatgtg
aacacttcagccttgactcagtctgagattcgtgatatcattctcggggctgagattact
cctccatcccagcagagacagcagattgctgagattgagaagcaggccaaggcttctagt
caactgcaagcagtcacaacaaaaactgtcaatgtgcatggtgaggaattaattgtcact
accacgagtccgtatgagcaggcagcttttggctccaagacagattggcgtgtcagagca
atttctgcgactaatctgtatttgcgtgtaaatcatatttatgtcaactctgaggacata
aaggagacaggatatacctacattatgccgaagaatattctgaaaaagttcatctgcgta
gcagatttgagaacacagattgcagggtacttgtatggtattagtcccccggacaatcct
caggtgaaagaaattcgatgtattgctatgccaccacaatggggtactcatcagcatgtt
aatcttccctcccaactgccagagcatgatttcttgaatgacctggaacccttggggtgg
atgcatacacaaccaaatgaacttcctcagctctcaccgcaggatgtaacaagccatgct
cgcgttttggagagcaataagcaatgggatggggaaaagtgcatcattcttacttgcagt
tttactcccggttcatgttcactgaccgcctacaagctcaccccatcaggatatgagtgg
ggacgtgcaaacaaagatactggtagtaacccacatgggtatcttcctactcattacgag
aaagtccagatgctactaagtgatcggttcctaggcttctacatgattcctgacagcggt
ccctggaattacaactttatgggggtgaagcatactgtcagcatgaaatatggtgtcaag
cttgggactcccaaagagtattaccatgaggaacatcgtcctactcattacttagaattc
agcaacatggaggatgtcgatactgtcgaagtagacagagaagacacttatacttga
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integrated database retrieval system
