Amaranthus tricolor (tampala): 130812495
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Entry
130812495 CDS
T09367
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130812495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130812495
Enzymes [BR:
atri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
130812495
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
130812495
DNA repair and recombination proteins [BR:
atri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
130812495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
130812495
NCBI-ProteinID:
XP_057533966
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All DBs
Position
1:complement(6205004..6218656)
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AA seq
450 aa
AA seq
DB search
MPELPEVEAARSAIAEHCIGKKIVKAIIADDTKVIVGVTRSDFEASILNKTIVAAHRKGK
NMWLQLNSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVKDTDEWPSKYSMFFIELDDGLEL
SFTDKRRFATVRLLDNPASVPPISALGPDALLESMTEGEFFNSLSKKKTAIKAVLLDQSF
ISGIGNWIADEVLYQARIHPSQSASSLSKDESSRLLKSIKEVLEKAVEVGADSSQYPTSW
IFHSREKKPGKAFVEGKKIDFVTVGGRTTAYVPELQKLNGVQATKAPAKPRKQASKKNNN
DDHNDNVDENAHNGHGDGDDVEEAIENAKAKQSKNRKGEKQPPKRMKSTKKDEDKNDDEE
EDGECEKKATQTRNRRATAKRKSQETEESKADNNSNTSRSRGKKVKTMSKSNKNNVSDAS
DDDGNESKDQKKQMKGDTKKPQRQTKTKSK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacttccggaggtagaggcagctagatccgccattgctgaacactgtatcggt
aagaagattgtcaaagcaattatagcagatgataccaaggtcatcgttggtgtcactcgt
tccgattttgaagcttctattctcaataaaaccatcgttgctgctcatcgcaagggcaaa
aacatgtggcttcagcttaattcccctccttttccttccttccaattcgggatggcaggt
gctgtgtacatcaaaggtgtagcagttactaaatataaaagatctgctgttaaggatact
gatgaatggccctcaaaatattccatgttcttcattgaattagatgatggtctggagctt
tcgttcacagacaagaggcgatttgccactgtgcggttgctggataatcctgcttctgtt
ccaccaatatctgcacttggtcctgatgctttgttggaatccatgacagaaggggagttt
tttaattccttaagcaaaaagaagactgctattaaggctgtactgcttgaccagagtttt
atttctggtattgggaattggatcgcagatgaagtgctgtatcaagcaaggattcatcct
tcacaaagtgcctcttccctttcaaaagatgagagttccagactgctgaaatccataaag
gaggtacttgaaaaagctgttgaggttggggctgatagtagtcagtatccaactagttgg
atttttcactcacgggaaaagaagcccggaaaggcttttgttgagggaaagaagatcgac
tttgtcactgtagggggaaggacaacagcatatgtaccggaactccagaagcttaatgga
gtgcaagccacaaaagcgcctgctaaaccacggaaacaagcttctaaaaagaacaataat
gatgatcacaatgataacgttgatgaaaatgcccataatggtcatggagatggggatgac
gtggaagaggcaatagagaatgcgaaagctaagcaatcgaagaatagaaaaggtgaaaag
cagcctcctaaaaggatgaaatccactaaaaaagatgaagataaaaacgatgatgaagaa
gaagatggtgaatgtgaaaagaaggcaacccaaactcgaaatcgcagggctaccgccaaa
aggaaatcacaagaaactgaagaaagtaaagctgataataacagcaacacatccaggagc
aggggaaagaaggttaaaactatgtcaaagtctaacaaaaataatgtttctgatgctagt
gatgatgatggtaacgagagcaaggatcagaagaaacaaatgaaaggtgacaccaaaaag
ccccagaggcagaccaaaacaaaatcaaaatag
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