Amaranthus tricolor (tampala): 130812517
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Entry
130812517 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130812517 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130812517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130812517
03019 Messenger RNA biogenesis [BR:
atri03019
]
130812517
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130812517
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130812517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
130812517
NCBI-ProteinID:
XP_057533987
LinkDB
All DBs
Position
5:29705369..29713348
Genome browser
AA seq
1006 aa
AA seq
DB search
MEMESSRRPPFDRSRDLIAKKARLTEDSTTPNSRQFQQPLQQQRSVIGSGSGATRYRTNN
NEKHRGSEDSSCGSLEQFQQHQELVNRYKTALAELTFNSKPIITNLTIIAGENLQAAKAI
ADTICANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRLVDLSVHSG
MRHLFGTWKGVFPPQPLQIVEKELGFPTATTGQLSGTTVSKSDSQYQRQSHSIHVNPRYL
EARQRLQQSSKVKITDIGLTDVGSSEDVERPERIVGFGHEGSWMDPSMKLHNIRPQREPV
REASLQKQGGGAYGDYDFAPGLSRPVITSSAKPMERIVGQKWLRDGKEGGESISGQKNVY
DSKHGIPDDVAVRPASNILYVQNDPNTAAEMSRNWKNSEQEEYLWDDLGTKPMDPGTTAT
IKKKNLFDDPERVELSSHLSKWQNQTEVRSNFEREHSAERLSSEQKEQLPYGFSRSSHPS
PVGVSSFGFPTTSVSASTGRHPSPGQSVSNQRVPSSSFSKRDPRQLLVEKEHVRSHPLLR
SDHRIASLSGPSSAGVRDKCFQDTMPTKHQSLNVPKPQGQALQKPPSPTSSFPQKHISPS
EQHSSSETELLGVGQKAQKLVGSFLKRGASSDNQNHIDGNIQGQLNVSTLLAAVMKSGLL
AGNSNSRQAGVQSSSSASFISSGPCGSIANVSQSKPEKPPLASAVSSPPASNTSAPSLNA
EAAKSNPLSILGTLLSKGLITAPKAVATAAVSVKSEDQLPEQSHAVELVSAVTDLTSKLS
DSLPESFSKKASSLDFKGKTLDTIKSAKEEDGDLIGLEFKPCVLRDLHPDVIDRLSDKLP
YTCAECGLHFKLQERLARHSEWHALKNSMRNCLNKPTRRWYSKSCDWISGKVGFPFGYNS
TCLMDGPIRTREENEKIVPADESQCVCLLCGELLEDFYCQEREQWMFKGAAYFSTMSESN
GEGSCNDDGSHKLIVHANCMSGDSGHDLSLIKGSKVEQSVNCHRIG
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagttcacgtagaccaccatttgatagatcgagagatttgattgccaaa
aaggcacgattaacagaagactcaacgactcccaatagcagacaattccaacaaccattg
caacaacagcgatcggtgattggttcaggctcaggagctactcgatatcggacaaataat
aatgaaaaacatagaggttccgaagattctagttgcggctctttagagcaatttcagcag
catcaggaactggttaatcgatataagacagctttggctgaattgacattcaattcaaag
cctatcattacgaatttgacgattattgcaggcgagaatttgcaggctgcaaaagccatt
gcggacaccatatgtgctaacattattgaggttcctagtgaccagaaactgccctcactt
tatctactggatagcattgtgaagaatattggtagagattacatcaagtattttgcagca
agattacctgaggtgttttgcaaggcatataggctagtagatctatcagtccattctggt
atgcgacatctttttgggacctggaaaggtgttttccctcctcagccactgcagatcgtt
gagaaagaacttggatttccaacagctaccactggccaattgtctggaactaccgtgtcc
aagtctgattcacagtatcagcgtcagtcacatagtattcatgtgaatcctagatatctg
gaagcaagacagcgtcttcagcagtctagtaaggtgaagattacagatattgggctcaca
gatgttgggtcatccgaagatgtggagaggccagagagaattgttggttttggacacgaa
gggtcatggatggatccttcaatgaagttgcataatattcgtcctcaaagagaaccagtg
agagaagccagtcttcagaaacagggtggtggagcatatggtgattatgattttgcacct
gggctttcaagacctgtaattacatctagtgctaaacctatggagaggattgttggacag
aaatggcttcgtgatggcaaagaggggggagagtcaatttctggccaaaagaatgtatac
gatagtaaacatgggattcctgacgatgtagctgtcagaccagcaagtaatattctttat
gtgcagaatgatccaaacactgctgctgagatgtctaggaactggaaaaattctgaacaa
gaggagtacctgtgggatgatttgggaaccaagcctatggatcctggtactacagctacg
ataaagaaaaaaaatttgttcgatgatccagagagagtggagctaagtagccacctttct
aaatggcaaaaccagactgaggtcaggtccaactttgagagagaacattcggctgagagg
ctttcctctgaacagaaagaacaactgccatatggattttcgaggtcttctcatccatct
cctgtcggtgtctctagttttggtttccctacaacttctgtttcagcgtctactgggcgt
catccatctccagggcaatctgtttcaaaccagcgtgttccttcctcttcattctctaaa
agagatcctcgtcaacttcttgttgagaaagaacacgtgagatctcatcccttgcttcga
tctgatcacaggatagcttcattatctgggccatcaagtgcaggggttcgtgataaatgt
tttcaggatactatgcctactaaacatcaaagtcttaatgtgccgaaaccacaaggacag
gctttgcagaaaccaccttcgcctacaagttcgtttccgcaaaagcatatatcgccatct
gagcagcactccagttcagagactgagcttttgggtgttggccagaaagctcagaagctg
gttggttcctttttaaagagaggtgcctcatcagataaccaaaatcacattgatggtaat
atacaaggccagttgaatgtgagtactttattggctgctgttatgaaaagtgggcttctt
gctggtaattctaattccagacaagctggggttcaatcttcttcatctgcttctttcatt
tcatcaggtccatgtggttcaattgctaatgtctctcaaagtaaaccagaaaagcctcct
ctggcgtctgcagtctcttcacctcctgcgagcaatacatcagcaccatctttgaatgct
gaggctgccaagtccaacccactttcaattttgggtacattgttatcaaaggggttgatt
actgcaccaaaagctgtagcaactgctgctgtttctgtgaaatccgaggaccagcttcca
gagcaaagccatgctgttgaactagtatctgccgttacagatttaacttccaaactctct
gattctctacctgaatcctttagcaagaaggcttcttccttggattttaaagggaagaca
ttggatacaattaaaagcgcaaaagaagaggatggagatctcataggactcgagtttaag
ccgtgtgtattacgagatctgcatcctgacgtgattgatagactctctgacaagctgccg
tatacttgtgctgagtgtggtcttcatttcaaactgcaagaaaggctagccagacattca
gagtggcatgctttgaaaaattcgatgcgtaattgcttgaataagccaaccaggagatgg
tattcaaaatcttgtgattggatttcggggaaggttggatttccttttggttataactca
acttgtctcatggatggacccatccggacgagagaagagaatgagaaaatagttcctgca
gatgaaagtcaatgtgtatgtcttttatgtggtgagcttttggaagatttttactgtcaa
gagagggaacagtggatgttcaaaggagcggcttacttttctactatgtcagaaagtaac
ggagaaggatcttgcaatgatgacggttcacacaagttgattgttcatgccaactgtatg
tcaggtgactcaggtcatgacttgagccttattaagggcagtaaagtggagcaatcagta
aactgtcatcgaattggttag
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