Amaranthus tricolor (tampala): 130812525
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Entry
130812525 CDS
T09367
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130812525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130812525
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130812525
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130812525
NCBI-ProteinID:
XP_057534002
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Position
5:28694427..28707473
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AA seq
254 aa
AA seq
DB search
MSTKPGTTPTYSPSTQKKKPQNATFNSSNGVRSDGRGFYQCRPAYLKTGVVSAAAGSACA
EFGNTKVIVSVFGPRESKKAMMYSNVGRLNCSVSYTPFATHVRGQVSEHKEFSSVLHKAL
EGAIILESFPKTTVDVFALVTESGGSELPVIVSCASLALADAGILMYDLVAAVSLSSLGN
NLIIDPLLEEERNEDGSLMLTYMPSRSEVTQLTITGEWTAPKMHEGMELCLDASRKLAEI
MRLCLKEADSLSNE
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactaaaccaggaacaactccaacatactccccttctacccaaaagaagaaacct
caaaacgccactttcaattcctctaatggagtccgttccgatggccgtggtttttaccag
tgtagacctgcctacttgaaaactggtgtcgttagtgctgctgctggttctgcatgtgct
gaatttggcaacaccaaggttatcgtgtctgtatttggaccgagagaaagtaagaaggca
atgatgtacagtaatgttggccgactaaattgcagtgtcagctatacaccttttgctacc
catgttcgtggacaggtttctgaacacaaagagttttcttcagtgcttcacaaagctttg
gagggtgcaataatattggaatcctttcccaagacaacagttgatgtttttgcgttagtt
acggaatctggtggaagcgaacttcctgtcattgtatcatgtgcgagtcttgctctagct
gatgcagggatcttgatgtatgatttggttgcagcagtctctctgtcttctcttgggaac
aatctcatcattgatcctcttctagaagaggaacgcaatgaagatggaagcttgatgctt
acctatatgccttctcggtcagaggttacgcagttgactattactggagaatggacagcc
cccaaaatgcacgagggaatggagctctgcctggatgctagcaggaagcttgctgaaatc
atgagattgtgcctgaaggaagcggattctctttcaaatgagtaa
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