Amaranthus tricolor (tampala): 130812531
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Entry
130812531 CDS
T09367
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial-like isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atri03016
]
130812531
Enzymes [BR:
atri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
130812531
Transfer RNA biogenesis [BR:
atri03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
130812531
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Bromo_TP_like
Motif
Other DBs
NCBI-GeneID:
130812531
NCBI-ProteinID:
XP_057534014
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Position
5:complement(30610090..30623536)
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AA seq
768 aa
AA seq
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METGTWATLPLAWFGFSRIIRFKGLHNCCGFSRIIRFKGLHNCCGQLSFVQRIKGRLFLT
SAQNRLGFARSEDLLKSKFEKPGLRGGLLLEYKKDSERVLLAVAQKPDGKKNWMVSDQNG
STCSIKPQQITYVVPGVDKFDHNQIPDFLQRAQDNLDPSLLELAWAELLEKNKSVTPEEL
AEMIYGIAEPLESYCAHLLLSTDEIYFSTPESKGYCSVYTPRPTNQVEELHRRKLIKQAA
EKKLQEFLQLLHQAKSRPIDAKPPRSSWILEERIHDLIEALVAYAVAEVCSDSQKRTAET
ILTAMGFAKTASSALNLLIDIGYFPVHVNLDLLKLDIRTNHSEDVVAAAEELLSDSCDID
QIRRKDLTHLKVYAIDVDEADELDDALSASRLQDGRIKVWIHVADPTCLVQPGSILDKEA
MSRGATVFLPEATYPMFPEKLAMEVMSLKQGEKCNALTVSVLLHSDGSIAEYSVENTIIR
PTYMLTYESASELLHLNLEEEAELKILSEAAALRLKWRRSQGAVGTTTLEARVKVANPDD
PEPQINLYVENQADHAMRLVSEMMILCGEAIATYGSYNNIPLPYRGQPQPNVDASTFSHL
PEGPVRSAAIVKIMRAATYDFRQPIHHAGLGLPGYVQFTSPIRRYVDLLAHYQVKSFIRG
NAAPFSAGQLEGIASIVNMQHRVARKLCSTSLRYWLLEYLRRQPKERKFRALILRFIKDR
IAALILVEVGLQASTWVLVGSKVGDEIKVQVEESHPRDDTLSLKQVAD
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgggtacgtgggcaactttaccgttagcttggtttggtttttcccgcataatc
agatttaagggtcttcataattgttgtggtttttcccgcataatcagatttaagggtctt
cataattgttgtggacaattgagctttgtccaacgaattaaaggaagattgtttttgact
tcagcacaaaataggttggggtttgcaagaagcgaagatcttctcaaaagcaagtttgag
aagccagggcttcgaggaggtttgcttttggaatacaaaaaagattctgaaagggtattg
cttgcagttgctcagaaacctgatggaaagaaaaactggatggtttctgatcagaatggt
tcgacatgctcaataaaaccacagcagataacttatgttgttcctggtgttgacaagttt
gaccataaccaaattccagattttttgcaaagagcacaggataacttggatccatctctc
cttgagcttgcttgggctgagctgcttgagaagaataaatcagtgactcctgaagagctg
gcagagatgatttatggtattgctgaacctctggaaagctactgtgcacatctcttgctg
tcaacggatgagatctacttctctactccggagagtaaaggctactgttctgtttacact
cctcggcctacaaatcaggttgaggaacttcataggaggaaacttatcaagcaggctgct
gaaaagaaattacaggagttcctacagttgttgcatcaagctaaatcaagacctattgat
gcaaagccacccagatcctcatggattctggaagaaagaatccatgatcttatagaggcc
cttgttgcttatgcagttgctgaagtatgtagtgatagccaaaagagaacagctgagacg
attcttacagccatgggttttgcaaaaacagcatcatcagcattaaatcttctcattgat
attggttattttccggtgcatgttaatcttgatcttttaaagctggacattcgtaccaat
cactcagaggatgttgtggcagctgctgaagaattgttgtcagattcttgtgatatagat
cagattcggaggaaggatcttacccacttgaaggtctacgctatcgatgttgatgaggct
gatgagcttgatgatgcacttagcgcgtcaaggttacaagatggccgaattaaagtttgg
atacacgtggcggatccgacctgcttagttcaacctggaagcatactggacaaagaggcc
atgagcagaggtgctacagtgtttctgcctgaagcgacttatcctatgttcccagagaag
cttgcaatggaagtgatgagcttaaaacaaggggagaagtgcaatgctttgacagtatct
gttttgctgcattctgatggcagcattgctgagtattcagttgaaaatactataatcaga
cctacctacatgctcacatatgaaagtgcatcagagctccttcatttgaatcttgaagag
gaggcagagttgaagattctgtcagaggctgcagctctacgtttgaaatggcgcagatca
cagggtgctgtaggcaccacaacattagaagcacgtgtcaaagtggcaaatcctgatgat
ccagaaccacagatcaatctttatgtggagaatcaagctgatcatgctatgcgccttgtt
tcagagatgatgattctttgtggagaggctattgctacatatggatcttacaacaacata
cctttaccttatagaggacagccacaaccaaatgttgatgcatctacattttctcatctt
ccagaaggaccagttaggagtgcagctattgttaaaattatgcgtgcagccacgtatgat
tttagacagccaatacaccatgctggtttgggacttcctggctatgttcagttcacatct
cctatacgtagatatgtggatctacttgctcattatcaggttaaatcttttattaggggt
aacgctgctccattttcagctggtcagctggaagggatagcttcaatagttaatatgcag
catagagttgcaagaaagctgtgcagtactagtctccggtattggttactagaatattta
agaaggcagccaaaggaaagaaagttccgtgctcttatactcagatttattaaggatcgg
attgcagccttgattctggttgaggttgggctacaagcttccacatgggttttagtgggt
tccaaggttggagatgaaattaaagttcaggtagaagaatcgcatcctagagatgatact
ttgtcccttaagcaggttgctgattaa
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