Amaranthus tricolor (tampala): 130812547
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Entry
130812547 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130812547
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
130812547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130812547
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130812547
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
GIY-YIG
T5orf172
Motif
Other DBs
NCBI-GeneID:
130812547
NCBI-ProteinID:
XP_057534042
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All DBs
Position
5:19724160..19728808
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AA seq
468 aa
AA seq
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MRRRRSWKTNQKKGIQDEPLQTQETHMPDSISINPEKENCEDGGSRFYGCYLLTSLSPRF
KGHTYIGFTVNPKRRIRQHNGEITCGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQH
PRESIAVRDAAASFKTLGGLANKIKLGLTMLTLQSWQSMNLTVSFFSTKHMKHAAGCPSL
PYQMKLHYCPMDDLPCYGGSDHPYGYDYEDDNSNDNEESSGYSDERQECSVGDSFQSDNI
ISAVQRSTDKILLGDRLVIGDQLASESSSMRGTLKEHTQPLHQLCVNVSGSTMNTLNEMS
QCREEIWIEDDKRSFPVLEEHIHSIGNFCGSENDLSTVLDENLPSCHMPPASTGNNLDEQ
CQQIGSSIREQSSIVNLQSSVAENTAKKDNVTCIIIDDDTENPFGPKKVQSPFRFVNTDW
PYSNEGVEIIELCTPSPKFRVNGSKKKRGIGDFPDFIDLTGSPSFVQL
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgaagaagatcatggaagaccaatcaaaagaaggggatccaagatgaaccatta
caaacccaagaaactcatatgcccgattccatttcaatcaacccagaaaaggaaaattgt
gaagatggtggatcaaggttttacggatgctatctgttgacgtctcttagccctcgtttt
aagggtcatacttatattgggtttactgtgaacccaaagagaagaatcaggcaacataat
ggagaaattacttgtggagcttttagaactaagaaaaaacgaccttgggaaatggttctt
tgcattcatggtttccctaccaatgttgctgctcttcagtttgaatgggcatggcagcat
cctagagaatctatagcagtacgagatgcagctgccagttttaaaaccctcggaggactt
gccaataaaatcaaactaggacttactatgcttacccttcagtcttggcaaagtatgaac
ctcacagtcagtttcttctcgacgaagcacatgaaacatgcggctgggtgtccaagctta
ccttaccagatgaagctccattattgtcccatggatgatcttccttgctatggaggtagt
gatcatccttatggttacgactatgaagacgacaactcaaatgataatgaggaatcttcc
ggctattccgatgagcgacaagaatgttcagttggtgattcgtttcagagtgataatata
atctccgctgtacaaagatcgactgataaaatcttactaggggatcgtttagtcattggt
gatcaattggctagtgagtcatcctcaatgagaggtacattgaaggagcatacgcaaccg
ttgcatcaattatgtgttaatgttagtggctcaactatgaacactttgaatgagatgtca
caatgtcgtgaagagatttggatcgaggatgataaaaggtcgttccctgtgttagaggaa
catatacattcgattggcaatttttgtggttctgaaaatgatttaagtactgttctcgac
gaaaatctgccttcatgtcacatgcctcctgcctctacggggaataatttggacgagcaa
tgtcaacaaatcggttcttcgataagagaacaatcttcaattgtcaatcttcaatcgtca
gttgcagaaaatactgcaaagaaagacaatgtaacatgtataataattgatgatgacact
gagaatccgtttgggccaaagaaagttcaatccccttttagatttgtgaatactgactgg
ccatattcgaatgagggcgttgaaattatagaactctgtacgccttcacctaagtttaga
gtcaacggcagcaagaagaaaagaggtatcggtgattttcctgatttcatcgacttaact
ggatcaccttcgtttgtccaactgtag
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