Amaranthus tricolor (tampala): 130812747
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Entry
130812747 CDS
T09367
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130812747
03015 mRNA surveillance pathway
130812747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130812747
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130812747
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130812747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
TniB
Motif
Other DBs
NCBI-GeneID:
130812747
NCBI-ProteinID:
XP_057534307
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All DBs
Position
5:complement(29346593..29355124)
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AA seq
487 aa
AA seq
DB search
MADSTETTVIPTTNESNQTETSSSTSIPPELKPPEIKRSWGDEVDDELPVDQLSINERKE
LDDPDDTSIQAVTDTPYTSAKRFEDLNLSEDLLKGLYVVMRFERPSKIQAITLPMILTPP
YKNLIAQAHNGSGKTTCFNLGMLSRVDPKLQAPQALCICPTRELAIQNLEVLQKMGTYTG
ISAERAVPENLDNPSHTPINKRAPVTAQVIIGTPGTIKKWISFKKLSLVNMKILVFDEAD
HMLAEDGFRDDSLRIMNDIKKIAPNCQVLLFSATFSERVKSFVERTIHNYNQLFVKKEEL
SLESVKQYKVHCPDELAKIKVVGEKILELGQKLGQTIIFVRTRNSAGYLHRALTDLGYEV
TTIQGALTHDDRDKIVKEFKDGLTKVLISTDLLARGFDQSQVNLVVNYDLPVKYDARTEP
DYEVYLHRVGRAGRFGRKGAVFNLISDDRDEMIMGKIENHFGAKVVEVPSFESDEDFEAA
LKDAGLL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcggactctacagaaaccactgtaatccctaccacaaacgagtcaaatcaaacagaa
acttcctcatcgacttccattcctccagagctcaaacctccagagattaagcgttcatgg
ggagacgaagtcgatgatgaactccccgtcgatcagctctcaatcaacgagcgaaaagaa
ttggatgatcctgatgatactagcatccaagcggttacagatacgccttatacatcggct
aagaggtttgaagatttgaatctatcggaggatttacttaaaggtttgtacgtagtgatg
cggtttgaacgacctagtaaaattcaagcgatcactttgcctatgattttaacacctcct
tataagaatttaattgctcaagcccataatggatctgggaaaacaacctgttttaatctg
ggaatgttgagtcgtgttgatccaaagttacaagctccccaagctctttgtatttgccct
accagagaattagccattcagaacttggaggtgctacagaagatgggaacatatactggt
ataagtgctgagagagcagttccagaaaacttggacaatccatctcatactccaataaac
aagcgggcacctgttacagctcaagtgatcattgggacacctggtacgattaagaagtgg
atttcatttaagaaattgtctttggttaacatgaagatccttgtttttgatgaagctgat
cacatgttagctgaggatggcttcagggatgattctcttaggattatgaatgatatcaag
aaaattgcacctaattgccaggttttgctattttctgccacctttagtgaaagggtgaag
tcttttgttgaaaggacaattcataattacaaccaactatttgtcaagaaggaagaacta
tcattagagtctgtaaagcagtataaggttcactgccctgatgaattggcaaaaatcaaa
gtcgttggagaaaaaattttggagttaggtcaaaagttgggccagaccataatatttgta
cgcacaagaaatagtgcaggctatcttcatagggcacttaccgatttaggttatgaagtg
actaccattcagggtgctcttacccatgatgacagagacaaaatagtgaaagagttcaaa
gatggtttgactaaagtgcttatatcaacagatcttcttgctaggggtttcgaccagtca
caggttaatttagttgttaattatgacctcccggtgaaatatgatgctaggacagagcct
gattatgaggtttatttgcatagagtcggacgagcaggacgttttggtcggaaaggtgct
gtatttaatttgattagtgacgatagagacgaaatgattatggggaagattgagaatcat
tttggagctaaagtcgttgaggttccttcatttgaaagtgatgaagactttgaagccgct
ctcaaggatgctggtctgctatga
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