Amaranthus tricolor (tampala): 130812851
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Entry
130812851 CDS
T09367
Name
(RefSeq) protein CHROMATIN REMODELING 25 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130812851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130812851
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
130812851
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
130812851
NCBI-ProteinID:
XP_057534455
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All DBs
Position
1:6686375..6697177
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AA seq
935 aa
AA seq
DB search
MEDEVESISSDSDTSDSIVELQDHDDDDRDFTVEDGDKHVDCVPIDDDDDHRSQNVDALI
RGNLIATRAPLLPRVLSVSDGAAVARKPFKPPFSKGLSNSKEDLLRRLLARKRFVPWRSP
TSSVSTPLVNIQVPEVDVEDDLEEVMTLPPGIEPLVLWEPEESKDEGDDSTPIAVDSSLV
RFLRPHQREGVQFMFGCVSGLSSPTINGCILADDMGLGKTLQSITLLFTLLRQGFDGKPM
VKKAIIVTPTSLVSNWEAEIKKWVQDRVQIIALCESSREDIMSGINNFTNPCSTTQVLII
SYETFRMHAPKFSVPGSCDLLICDEAHRLKNDQTITNRALASLVCKRRILLSGTPMQNDL
EEFYAMVNFTNPGILGNATHFRRYYQAPIVNGREPTATDEEKNVGLSRSEELSSKVNQFI
LRRTNALLSNHLPPKIVEVVCCQLTPLQSELYNHIIQSKNVKKVISEAAKRAKILAYITA
LKKLCNHPKLIYDAIKAENSGKSDFADCLSFFPPEVFAGRSGAWTGGHGLWVELSGKMNV
LARLLSQLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGSTSIGKRQKLVNSFN
DMSKALILQDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKR
VYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQVDRDQGNFFSTEDLRDLFTYHADVRS
EIHEKMNCVRCKRSDSIQNGIPEKNVEVNETDLIGDACQTRQNDIGGFAELSGLHMLKSS
QKQVGSPSEEDLLNWAHHVSPTTVPDVLFQAAAGDEVSFVFTNQIEGKLVPQESMQTKIQ
ENSRTPVLCSDSKENLKHDSLLSSERKTYLSYHGSPVRKRPLGSPKPVQVAPLESVRSSL
KDLSNLSWRPKTLLSRQLPLKRTCHFRESDNVMDQ
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgaagttgaatccataagttcagattccgatacctccgattccattgtagaa
cttcaggatcacgacgatgacgatcgagatttcacagttgaagatggagacaaacatgtc
gattgtgtccccattgacgacgacgatgatcacaggtcacaaaatgtcgatgccctaatt
agaggaaacctaattgcgacacgagcaccgttgcttccacgagttctttccgtatcggat
ggagccgcggttgcaagaaagccgttcaaaccaccattctctaagggtttgagtaattcc
aaggaagatttgcttaggcggcttttggcccgtaaacgatttgtcccatggcggagtcct
acaagctcagtttcgactcctttagtgaatattcaagttccggaggttgacgtggaagat
gaccttgaagaagtcatgactttgcctcctggaatcgagccattagttttatgggaacct
gaagagtctaaggatgaaggggatgactcgacacccattgctgttgattcctcgcttgtt
cgtttccttcggcctcatcaaagggaaggtgtgcagtttatgttcggatgtgtctctggg
ttatcttctcctactattaacggatgcattttggctgatgatatgggtttggggaaaact
ctacaatctatcacattgctgtttactcttctgcggcaaggatttgatggaaaacctatg
gttaaaaaggcgattatagttactcctacaagtcttgtgagcaactgggaggcagaaata
aaaaaatgggtacaggatagagttcagattattgctctttgtgaaagcagccgagaggac
atcatgtctggaattaataatttcacaaatccatgcagtacaacgcaggtattgattatt
tcatacgagacattcaggatgcatgctccaaaattcagcgttcctggatcatgtgatctc
cttatttgtgatgaggctcacaggctaaaaaatgatcagacgatcacaaaccgggcattg
gcttcccttgtatgcaagcgccgcattttgttatctggtacaccaatgcagaatgacctt
gaagagttttatgccatggttaatttcaccaatcctggaattttggggaatgccacacat
tttcggaggtattatcaggcacctattgtaaatgggagagaacctacagccaccgatgaa
gaaaaaaatgttggtctttcacgctcagaagaattgagttcaaaagtcaatcagtttata
ttgagaagaacaaacgcattgctatccaatcacctaccaccaaagattgttgaagttgtt
tgttgtcaactaacccctttgcagtcggaattatacaaccatattatacaatcaaaaaat
gtaaaaaaggttattagtgaagcagcaaaacgagctaaaattttagcatacattacggcc
cttaagaagctctgcaatcacccaaagctcatctacgatgcaataaaagctgaaaattca
ggtaaatcagactttgcggactgcttgagctttttccctccagaagtttttgctggaaga
tctggagcatggactggtggtcatggtctttgggttgaattatcagggaaaatgaatgtt
ctagcacgcttattatctcagttgcgacaaaaaacagatgatcggatagtcctagtttca
aactacactcagactctcgacctctttgctcaattgtgccgggaaagaagatacccatat
ttgagacttgatggatcaacgtcaattggcaaacgacaaaagctggtcaacagtttcaat
gatatgtctaaggctcttattttgcaggatgaatttgcttttctcttaagcagtaaagct
ggtggttgtggactgaacttgattggaggaaatcgcttggtcttgtttgatcctgactgg
aatcctgccaatgataaacaagctgctgctagagtttggagggatggacaaaagaagagg
gtgtacatctacaggtttctgagcactggaacaattgaagagaaggtttaccagcgtcag
atgtcaaaagaagggctgcagaaagtaattcaacaggagcaagttgatcgtgaccagggg
aacttcttttccacagaagatcttcgtgacctttttacataccatgcagatgtcaggtct
gagatccatgaaaagatgaactgtgttcgatgtaaacgtagtgattccatacaaaatggc
atacctgagaaaaatgtggaggtcaatgaaactgatttaattggtgatgcttgccaaact
agacaaaatgatattgggggttttgctgaactatctggattgcacatgctaaaaagttca
cagaaacaggttggttcaccttccgaagaggatttgcttaattgggctcatcatgtatct
ccaactacagttcctgatgttctttttcaagctgcagccggtgatgaggtctcttttgtg
tttacaaatcaaatagaggggaagcttgtccctcaagaatccatgcagactaagatacaa
gagaacagtaggacgccagttctttgttctgattcaaaggaaaatttgaagcacgattct
ttgttgtcatctgaacggaaaacttatctatcatatcacggaagtcctgtcaggaagcgg
cccttaggttcacctaagcctgtacaagtggctcccctggaatcggtaagaagttccctt
aaagatctgtccaatttatcatggaggcctaagacacttctcagcaggcagctacctctg
aaaagaacatgtcattttcgagaaagtgacaatgtgatggaccaatag
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