Amaranthus tricolor (tampala): 130812856
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Entry
130812856 CDS
T09367
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130812856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130812856
03009 Ribosome biogenesis [BR:
atri03009
]
130812856
04131 Membrane trafficking [BR:
atri04131
]
130812856
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atri04147
]
130812856
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
130812856
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
130812856
Membrane trafficking [BR:
atri04131
]
SNARE
SNARE associated proteins
Others
130812856
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130812856
Exosome [BR:
atri04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130812856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
AAA_18
ATPase_2
Parvo_NS1
AAA_lid_PRS2_C
IstB_IS21
Vps4_C
ABC_tran
AAA_7
Viral_helicase1
NB-ARC
TsaE
AAA_24
DUF815
NACHT
Zeta_toxin
Molydop_binding
Zot
Motif
Other DBs
NCBI-GeneID:
130812856
NCBI-ProteinID:
XP_057534458
LinkDB
All DBs
Position
5:complement(28756575..28761969)
Genome browser
AA seq
807 aa
AA seq
DB search
MAHNPESSDSKGTKKDFSTAILERKKAPNRLVVDEAVNDDNSVVAMHPDTMEKLQLFRGD
TVLIKGKKRKDTICIALADETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDYFLVRGGMRSVEFKVIETDPSEFCV
VAPDTEIYCEGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEILRIHTKNMKLSDEVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGQSNPSALRETVVEVPNVSW
DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLSI
FKAVLRKSPIAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSEN
PEAMEEDDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFN
NTSSGGTTGADAFAASAGGADDDDLYN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaatcctgaatcttctgattcaaagggaacgaagaaggacttcagcactgcg
attctcgagcgtaagaaagccccaaatcgtttggttgtagatgaggctgttaatgatgat
aattcagttgttgcgatgcatcctgataccatggaaaaacttcaacttttccgcggtgac
accgtcttaatcaaggggaaaaaacgtaaagatacaatctgcattgcacttgctgacgag
acatgtgaagagcctaagattaggatgaacaaggttgtgagatctaatctaagggtgcgg
cttggtgatgtggtatctgtacaccaatgtcctgatgtgaaatatgggaagcgtgtccat
attcttcctattgatgatacaattgagggtgtcacaggaaatttgtttgatgcatacctg
aaaccttattttactgaagcctaccgtccagtgaggaaaggggattattttcttgtgaga
gggggaatgagaagtgttgaatttaaggttattgagactgatccttccgagttttgtgtg
gtcgccccagataccgagatctattgtgagggtgaaccaatcaaaagagaagatgagaat
agattagatgaggttgggtatgatgatgtgggtggtgttaggaaacagatggcccaaatt
agggagcttgtagaattaccattaagacacccacaattgtttaaatctattggtgtcaag
cctcctaagggaattttgctctatggacctccaggatcaggaaagactttaatagcccgt
gctgtggcaaatgagactggtgcattcttcttttgtattaatgggccagaaatcatgtca
aaattggctggggaaagtgaaagcaatcttagaaaagcttttgaggaagctgagaagaat
gcgccttccatcatttttattgatgaaatcgattcaattgctcccaagcgagagaaaact
aatggagaggttgagaggcgtattgtttcccagcttttgactcttatggatgggcttaaa
tctcgggcacatgttattgttatgggtgctactaatcgtcccaacagcattgaccctgca
ctgagaagatttggtcgatttgacagagaaatagatattggtgttccagatgaaattggg
agacttgagattctccggattcacactaaaaatatgaagctctccgatgaagtcgatttg
gaaaggatttccaaggacacacatggttatgttggtgctgacttagctgccttatgtact
gaagctgcacttcaatgcatcagagagaagatggatgtaattgatctggaagatgagact
attgatgctgagatccttaactccatggctgttacgaatgaacacttccagactgctctt
gggcagagcaatccatccgcactccgtgaaacggtcgtggaagttcctaatgtctcatgg
gatgacattggtggtcttgaaaatgtcaaacgggagcttcaagagactgtacaatatccc
gtggagcaccccgagaaatttgagaaattcgggatgtcgccctccaagggagttcttttc
tacggacctcctggatgtggaaaaactttgctggcaaaggctattgctaatgagtgtcag
gctaacttcatcagtgtgaagggtcctgaattactaacaatgtggtttggagagagtgaa
gctaatgttcgagagatttttgacaaggcccgtgggtcagctccctgtgttttgttcttt
gatgagcttgattcaattgcaactcagaggggaagcagtgtaggtgatgctggtggtgcc
gctgaccgggttttgaatcaactgttgactgaaatggatggcatgtcggccaaaaagact
gttttcatcattggagccacgaacagaccggatattattgatccagctcttctgagaccc
ggacgtcttgatcagctaatttacatacctcttccggatgaggaatctcgcttatccata
tttaaggcagttctgaggaagtcccctattgccaaagacgttgatcttagagcgcttgcc
aaatacactcaggggttcagtggtgcagatatcactgaaatatgtcagcgggcttgcaaa
tatgccatccgagaaaacattgaaaaggacattgaaagagagaagaggagaagtgaaaac
ccggaagcaatggaagaggacgatgtagaagacgaagttgctgaaatcaaggctgctcat
tttgaagaatcaatgaagtatgctcgaaggagtgttagcgacgctgatattcgtaaatat
caggcatttgctcagacattgcagcagtcaagaggattcggcactgagttccggtttaac
aacacaagttctggtggtacgactggtgcagatgcatttgctgcctcagctggtggagct
gatgacgatgatctctataattag
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