Amaranthus tricolor (tampala): 130812925
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Entry
130812925 CDS
T09367
Name
(RefSeq) protein PAT1 homolog 2-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130812925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130812925
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130812925
mRNA degradation factors
5'-3' decay
Decapping complex
130812925
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130812925
NCBI-ProteinID:
XP_057534555
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Position
5
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AA seq
858 aa
AA seq
DB search
MKGSLRIWPNFSFFGFSFFVPLRNVPSILAHMHPHIACILDSQVVTESRNPRNAGSIGSI
GSGSFSVEGNSLFDATQYEFFSQKAVEEVELGGLEDDKDDLSLAPVHTDEYQLFDRDEGL
HANLGSLSDLDDLETTFSKLNRVVSGPRNPGVIGDRGSGSLSRESSSAADWSRDGWLDHG
MSDMENALESKGWSSQPPCVSNHPGEFNKPLYRALSYPEQQLQQQQYLQQHFSNESMSSP
QSSFTSFPPPGGRAQQPLSHRYSLPLNIPSDPNLLAPNLSLMPDSGCHFSGISSSHGLRY
GGRMSSLTSGHGISDQPGSHWSNHAGLLHVDHSSFLNNILQQQFPNQNVMRHNSLLISPQ
RRLQPGLHQSQLNGGYPSLHTNHVKKYGTAYALTETRDPRPKSTRGKHHRLSQQTSESAC
QKSDCIQFKSKHMTAEEIDSILKMQHTSYSNDPYIDDYYHQACAAKRSSGTRLKQRFAPL
HLRDLPSRSRNSSSDQHSHQSFDTLRRMALSSICRPQPLLDIEPLSSGGADGSTKCRSLE
QEPMFAARIAVEDAFTLLLDVDDIDRYLQFSPPQDGGSQLRRKRQVLLEALAASLQLVDP
LGSGGHNVGPEDDIVFMRLVSLPKGLELLGKCLELIIVSPGPSSELARIVCMSVFRHLRF
LFGGPPADSGAGVATVKLAQVISTCVSGMDLRGVSSCLAAVVCSSEQPPLRPLGSPAGDF
GSVILKNLLERATLLTITNPQAPGSNIIPHYNFWTASFASFFTLLTNYCADKYETIVQSV
SNQAESSSALEFSRSEVARAVSREMPVELLRASLPHTDEHQRRTLMEFAHRSIPFPVTEF
NLCEEEYSGWITSESVRS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaagtttgagaatttggcctaacttctctttttttggtttttcctttttcgtg
cctttgagaaatgttcctagtattttggctcacatgcatcctcacattgcttgtatattg
gattcacaggttgtgacggaatccagaaatcctagaaatgctggttctattggctctata
ggttctggatctttttctgtagaaggtaattcactttttgatgctactcaatatgaattc
ttcagtcaaaaggctgttgaagaggtggagttaggaggcttagaagatgataaggatgac
ctatctctagctcctgtgcatactgatgaatatcaattgtttgatagagatgaggggctg
catgccaatttaggatctttgtccgatttggatgatctggaaactacattctcaaagctg
aacagagtagttagtgggccaaggaatcctggggttattggcgatagaggttctggatcc
ttgtcaagagaaagttcatctgctgcagactggtcgagagatggctggttggaccatggt
atgtcggatatggaaaatgctctggaaagtaaagggtggtcatctcagcctccgtgtgtg
tccaatcatcctggtgaatttaacaagcctttgtatagagcattgtcttacccagagcag
caactgcaacagcaacagtatcttcagcaacacttttcgaacgaatctatgtcaagtcct
caatcatcttttacctccttccctcctccaggaggcagagcacagcagcctttgtctcat
cgctattcacttcctctaaatatcccatctgatcccaatcttttagcaccaaatctgtca
ctaatgcctgattctggttgtcacttttcggggatatctagttcccatggattacgatat
gggggaagaatgtctagtctaacatctggtcatggaatcagtgatcagccagggagtcat
tggagcaaccatgctggtttattacatgtagatcattctagttttctcaacaatatattg
caacaacaatttcctaatcagaacgtaatgcgtcataattcactgttgatttcaccacaa
cgacgtttacagccaggattgcatcagtctcagctgaatggaggctatccatctctacat
acaaatcatgtaaaaaagtatggcactgcatatgctttaactgagacaagggatccaaga
cctaaatcaactcgtggtaaacatcatcggcttagccagcaaacttccgagtctgcttgc
caaaagagtgattgcatccagttcaagtccaagcatatgactgcagaggagattgatagc
attctgaagatgcaacatacttcttacagcaatgacccttatatagatgattattaccac
caagcttgcgctgccaaaagatcttcaggtacaaggttgaaacagcgctttgctccactt
catttgcgtgatctaccttctcgttcacgtaatagtagttcggatcagcatagtcatcaa
tcctttgataccttgagaaggatggccttgtcatccatttgtaggcctcaaccgcttctt
gatattgaacccttatcctcaggaggtgctgatggtagcactaaatgcagatcactggaa
caagaaccaatgtttgctgctagaatagctgttgaggatgcttttactcttcttcttgat
gtagatgatatagaccgttatttacaatttagtccaccgcaagatggtgggtctcagctt
aggcggaaacgtcaggtacttctagaagctttagctgcatcccttcagcttgtcgatcct
cttggaagtggggggcataatgttggtcctgaggatgatattgtgttcatgcggcttgtt
tcccttcctaagggattggagcttctgggaaagtgcttggagcttatcatagttagccct
ggtccttcaagtgagctggctcgaattgtctgtatgtctgttttccgccatttaaggttt
ctttttggtggtcctccagccgactctggagctggtgtagctactgtaaagcttgcccag
gtgatttcaacttgtgttagtggcatggatctccgtggtgtgagctcttgtctggctgct
gttgtttgttcttcagagcagccgccacttcgccctcttggaagtcctgcaggagatttt
ggttccgtaatcttgaaaaatctccttgaaagagctactttgctgaccatcactaatcct
caagcccctggcagcaatattattcctcattacaatttctggacagcttcctttgcatcg
ttcttcactctgctcaccaactactgtgctgataagtatgaaactatagtgcagtccgtc
tcaaatcaagctgagtctagttctgcattagaattttcacgctcggaagtagcaagggcg
gttagcagggaaatgccagtggaacttctacgtgcaagtcttcctcacaccgatgagcat
cagcggcgaacattgatggagtttgcgcaccgatctataccgttccctgtcactgaattc
aatctctgtgaagaggaatacagtggctggataacctcggaatcagttagaagttag
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