Amaranthus tricolor (tampala): 130812970
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Entry
130812970 CDS
T09367
Name
(RefSeq) autophagy-related protein 16 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04136
Autophagy - other
atri04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
130812970
04136 Autophagy - other
130812970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atri04131
]
130812970
03029 Mitochondrial biogenesis [BR:
atri03029
]
130812970
Membrane trafficking [BR:
atri04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
130812970
Others
Specific organelles associated proteins
Auto phagosome
130812970
Mitochondrial biogenesis [BR:
atri03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
130812970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
WD40_Gbeta
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_VPS8
Beta-prop_WDR90_POC16_2nd
ATG16
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_ACSF4
Beta-prop_SPT8
ASA1
Beta-prop_DCAF4
Beta-prop_NWD2_C
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
eIF2A
Beta-prop_NOL10_N
WD40_RFWD3
Ge1_WD40
Beta-prop_EIPR1
WDR54
Beta-prop_HPS5
Cytochrom_D1
Beta-prop_RIG_1st
Beta-prop_Vps41
CCDC13
PEP5_VPS11_N
CCDC171
Rab11-FIP3
DUF8567
OVT1
ZapB_rel
Fzo_mitofusin
CCDC89
Motif
Other DBs
NCBI-GeneID:
130812970
NCBI-ProteinID:
XP_057534620
LinkDB
All DBs
Position
5:complement(24203132..24216416)
Genome browser
AA seq
559 aa
AA seq
DB search
MYADRLEEDSNPPIEDRLNSNVAANSLCRQPITGKSRLNEDEIAIAAIKHALKALRKRHL
AEEAAHAPTIIAISRPLVYQGSEWKEKAEQLELELQQCYKAQSRLSEQLVTEVAEGRVSK
SVIQEKETTLANFKKEFDQISNEYSELKMLLDEKTKGLELVTSENQELKRQLEEISLKVK
SAEAENKMLIDRWMLQKMQDAERLNEAVSRIIGHRRDCLVNAVYDDLLGQFRASSIQKLA
REQVDGVVRQFEEGAEFFAESIIPSTCKNRIHAHDGGCASILFEYNSSKLVTGGQDHSIK
MWDTSTGSLSRTLHGCLGSVLDLTITQDNKTIIAASSSNNLYVWDVTSGRIRHTLTGHID
KVCAVDVSKVSNRHVVSAGYDRTIKSWDLQKGYCTKTIIYPSNCNAICFSVDGRTICSGH
VDGNLRLWDIESGKLLSEVAAHSLAVTSISLSRNGNTILTSGRDNVHNLFDLRTLEVYGT
LRASGNRMASNWSRSCISADDNYVAAGSADGSVHIWSIQKADIVSTLKEHGSSVLCCTWS
GLGKPLATSDKNGVICTWM
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtatgctgatcgtttggaggaagattccaacccgccaatagaagataggcttaacagc
aacgttgccgctaattccctttgccggcaacccattaccggtaaaagcaggttaaatgaa
gatgagattgcaatagcggcaataaagcatgctttgaaagctcttcgaaagcgacattta
gcagaagaagctgctcatgctccaaccatcatcgctatatctagacctcttgtttatcag
ggatcagaatggaaagaaaaagcagaacagttggagcttgaattgcagcaatgttacaaa
gcccaatctcgactatcagagcagcttgtgactgaagttgcagagggtcgagtgagcaaa
tctgtaattcaagagaaagaaacaactttagctaactttaaaaaggagtttgatcagatc
agcaacgagtactcagagttgaagatgcttttagatgaaaagaccaagggtttagaattg
gtgacaagtgagaatcaagagctgaaaagacaacttgaagagataagtttgaaagtgaaa
agtgcagaagctgaaaataaaatgttgattgatcgatggatgcttcagaagatgcaggat
gcagagcgtctcaatgaggcagtgagcagaatcattgggcaccggagggactgtctggta
aatgctgtttatgatgacctactgggacaatttagggccagcagcatacagaaacttgct
cgtgaacaagttgatggtgtggttcgtcaatttgaggaaggtgctgagttttttgctgaa
tcaatcattccttcaacttgcaagaacaggattcatgctcatgatggtggttgtgcttcc
atattgtttgagtacaattcgagcaaattggtcactggagggcaggaccattctattaag
atgtgggatactagcacaggatcgttgagtcgtacgcttcatggttgcttgggttctgtt
cttgatctcacaatcactcaggacaataaaactattatagcagcaagtagttcaaataac
ttgtatgtttgggatgtaacctcaggccgaattcgacatactcttacaggacatatagac
aaagtatgtgcggtagatgtgagcaaagtctccaaccgccatgttgtcagtgcaggatat
gatcgaactataaaatcttgggatttgcagaaaggttactgcactaaaacaatcatatat
ccaagcaattgcaatgccatttgtttcagtgtagatggaagaacgatatgttcaggtcat
gttgatggtaatcttcggctttgggacatagagtcagggaagcttctcagtgaggttgct
gcgcattctcttgctgtgacatcaatctccttgtctcgaaatggaaacaccattttgacg
agtggaagagataatgtgcataatctgttcgatttgagaacactcgaggtttatggaaca
ttaagggcaagtggaaacagaatggcatctaactggagcagatcctgtatcagtgcagat
gacaattatgttgctgcaggatctgctgatggatctgtacatatatggtcaatacagaaa
gcagatattgttagcactctcaaagaacacggttcgtctgttttatgctgtacttggagt
ggtctaggaaagccattggcgacttccgacaagaatggagttatctgcacttggatgtga
DBGET
integrated database retrieval system
