Amaranthus tricolor (tampala): 130813243
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Entry
130813243 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130813243 isoform X1
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130813243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atri03009
]
130813243
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
Pre-60S particles
GTPases
130813243
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFL1
GTP_EFTU_D2
EF-G_D2
EFG_III
SRPRB
DUF6415
EFG_IV
Motif
Other DBs
NCBI-GeneID:
130813243
NCBI-ProteinID:
XP_057535013
LinkDB
All DBs
Position
5:10912547..10915877
Genome browser
AA seq
1025 aa
AA seq
DB search
MSAQEQVRNICILAHVDHGKTTLADHLIASCGGGVLHPKQAGKLRFMDYLDEEQRRAITM
KSSSICLQYKSHLINLIDSPGHMDFCSEVSTAARLSDGGLVLVDVVEGVHIQTHAVLRQA
WIEKLTPCLVLNKIDRLICELKMTPMEAYTRLWKIVLEVNSIVSGYKSEKYLSDIDSILA
SGSNSELGCDQDYEFVEDDQEDMFQPQKGNVVFGCGLDGWGFSVEEFAEFYASKLGASTA
ALRKALWGPWYFNTKSKRIVGKKAMGGGSKVRPMFVQFVLEPLWQVYQAALEPDGDKGML
VKVIKSFNLSVPSRELSNKDPKAVLQAVMSRWLPLSDTVLSMVIRCMPDPVTAQGWRIGR
LLPKREVVDKVAESEVFSEAEFTRKCVEKCDSSSDAPTVAFVSKMFAVPRKMIPQLGPNG
EILNNSTDEYGNNTESDECFLAFARIFSGVLTSGQKIYVLSALYDPLKGETSQKHLQVAE
LQSLYLMMGQGLKPVASAKAGNVVAIRGLGQHILKSATLSSTKNCWPFSSLMFQVSPMLK
VAIEPSDPSDMSALMKGLRLLNRADPFVEVSVSSRGEHVLAAAGEVHLERCTKDLKERFA
KVSLEVSPPLVSYKETIEGEGPNPLDNLKVLLGNTDFVEKTTPNGRCTVRVHVMKLPTAL
TKLLDENSDTLGEIISGKLGQTYKKLESQIGSVAEDEEPLEALRKRITDAVESDIVSAVG
ENDTDKIQKCKLLWDQLLERIWSLGPGQVGPNLLITPDSKDKNTEDSIIVPGYSHVSAKL
GFIDDSKNSCSAQVDQALYAEAVSLESSVVSGFQIATSAGPLCDEPMWGLAFIVEAYISS
ASTQSSEADNSQQLLEQYGMFTGQVMTAVKEACRAAVLQKKPRLVEAMYFCELTTPVEHL
GAMYSVLARRRARIVKEEMIESSSLFTVHTYLPVSESFGFADELRKWTSGSSSALLVLSH
WEQLMEDPFFVPKTEEEIEEFGDGSSVPRNTARKLIDAVRRRKGLPVEEKVVQHATKQRT
LARKV
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgcaagaacaagttcgaaacatttgcattctagcacacgttgatcatggcaaa
acaacgttagcggatcacttaatcgcatcttgtggtggaggagttttacatccaaaacaa
gcaggtaaattacgattcatggattatcttgatgaagaacaaagaagagcaattaccatg
aaaagttcatcaatttgtttacaatataaatctcatttaattaatttaattgattctcct
ggtcatatggatttttgtagtgaagtttcaactgcagcaaggttaagtgatggcgggtta
gttttagttgatgtagttgaaggtgttcatattcaaactcacgctgttttaagacaagct
tggattgagaaactaaccccatgtttagttttaaacaagattgataggttaatttgtgaa
ttaaagatgacgcccatggaagcttatactagattatggaagatagttcttgaggttaat
agtatagtgagtggatataaatctgagaaatatttatcagatattgattctattcttgct
agcgggtcgaacagtgaattgggttgtgatcaagattatgaatttgtggaagatgatcag
gaagatatgtttcaacctcaaaagggtaatgtggtttttggttgtggattggatggatgg
ggttttagtgtggaggagtttgctgagttttatgcatctaaacttggagcgagtaccgct
gctttgagaaaggcgttatggggtccttggtattttaacaccaagagtaagagaatagtg
ggaaagaaagcaatgggagggggcagtaaggttcgtccgatgttcgttcagtttgttttg
gaacctttgtggcaggtttatcaggcggctcttgagcccgatggtgacaaggggatgtta
gtgaaggtgattaaatcatttaatttgtccgttccatcacgtgagcttagtaataaggat
cctaaagctgttcttcaagctgtgatgagtcgctggttgccgctttctgatactgtgttg
tcgatggttataaggtgtatgccagaccctgtaacagcacagggttggcgaattggtagg
ttacttcctaagagggaggttgtggataaggtggctgagtctgaggtgttttctgaggct
gaattcacaaggaagtgtgtggaaaaatgtgattctagttctgatgctccgactgttgct
tttgtttctaagatgtttgctgttccgaggaagatgattcctcaattgggtccaaatggg
gaaatattgaataattcgactgatgaatatgggaataacacggaatctgatgaatgtttt
cttgcatttgctaggatctttagtggagttcttacttcaggacagaaaatctatgttctt
tctgctttgtatgacccacttaaaggggaaacatcacagaagcatttgcaggttgcagaa
ctacagtcattgtatctgatgatggggcagggtttaaaacctgttgcctcggccaaggct
gggaatgtggtagctatacgaggacttggacagcatatcttgaaaagtgctactctttca
tcaactaagaactgttggcctttctcaagcttgatgtttcaagtttctccaatgctaaaa
gttgccattgaaccttccgacccgtcagatatgagtgctctcatgaagggtttgaggcta
ttaaatcgcgcagatccatttgttgaggtgtcagtgtcttccagaggagaacatgtgctt
gctgctgcaggagaggtgcatctcgagagatgcacaaaagatttgaaagaaaggttcgcc
aaagtgagcttggaagtctcgcctcctctggtttcttacaaagagactattgagggtgag
ggaccgaatccattggataatttaaaagtactgttaggaaataccgactttgttgaaaaa
acaactcccaatggaagatgcactgtcagagtacatgtcatgaagcttccaactgcactc
actaagttgcttgatgagaattcagacactcttggagaaattattagtggtaaactcggt
caaacttataagaagttggaatcccagataggttctgttgcagaagatgaagagccactt
gaagcactaaggaaacgcattacggatgctgtagaaagtgatattgtttctgctgttggg
gaaaatgacactgataagattcaaaagtgtaagcttttatgggatcagcttctcgagagg
atttggtcgctgggtcctggccaggttggccctaatttactcattaccccagattctaaa
gataaaaatacggaggattcaataatcgttcctggatactcgcacgtgtctgctaaactg
ggttttatagatgattctaaaaattcgtgttctgcccaggttgatcaagcactttatgca
gaagctgttagtctggaaagtagtgtagtgtctggttttcaaattgctacttcagctggt
ccattgtgtgatgaacctatgtggggcttggcatttatcgttgaggcttacatttcttca
gcatccactcaatccagtgaggctgataattctcaacagctattggagcagtatggcatg
ttcactggtcaggtcatgacagcagtgaaagaagcgtgtcgagctgctgtacttcagaag
aaaccccgtcttgttgaagcgatgtacttttgtgagctgaccaccccagttgagcatctt
ggagccatgtacagtgtacttgctcgaaggagagcaagaatagtgaaggaagagatgata
gaaagttcatcgttgttcaccgtccatacttatttgccggtatctgaaagctttgggttt
gcagatgagcttaggaaatggacttctgggtcttcaagtgcgcttcttgttcttagtcat
tgggaacaacttatggaggatcctttctttgttccgaaaacagaggaagagattgaagag
tttggagatggttcaagtgttcctcgaaatacagctagaaaactgattgatgctgtgagg
cggagaaaaggattgcctgtggaggaaaaggttgttcagcatgcaactaagcagaggact
ctggctcggaaggtttag
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