Amaranthus tricolor (tampala): 130813276
Help
Entry
130813276 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130813276 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130813276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130813276
03041 Spliceosome [BR:
atri03041
]
130813276
03036 Chromosome and associated proteins [BR:
atri03036
]
130813276
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130813276
Spliceosome [BR:
atri03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130813276
Complex B
130813276
Complex C
U2 SnRNP specific factors
130813276
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130813276
TFTC complex
130813276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
130813276
NCBI-ProteinID:
XP_057535063
LinkDB
All DBs
Position
1:40046426..40064145
Genome browser
AA seq
1403 aa
AA seq
DB search
MAVTQEESSSSSSSAANSQLKTSNGVHYLAKCVLPSSVVLQVVHGHIRSPTSNDVVFGKE
TSIEMVAISEDGVVQSICEQPVFGVIKDIAILPWNKNFRAQNSQVLGKDLLVIVSDSGKL
SFLTFCNEMHRFFPVTHVQLSNPGNSRHQIGRMLAVDSLGRYIAVSAYEERVALFSVSAS
SDIDMIDKRITYPPEPEDDLADMELQKSGQSVLVNSLPAKQIGTDPATSSHYPVPRMHGT
IWSMCFISKHLNQFSNEDNPVLAILASRQISCLNELLLLEWDVRENAVRVLSSFVEDGPL
AYAITEVHGSQGLALLFRVGDILLLDLSDASNPLCVQRTNLSSSISISEEKNCVEDSFRM
QDGDDEGFIAARALLELQDYGMDFNKGSDPMSIDAGLCSAKSAAKFVCSWSWEPATDKNP
TIIFSVDTGEYFSIEISCGPDGPKINMSDCLYNALPSKALLWTKNGFLAAIVEMGDGMVL
RVVDGRLYYSSPIQYIAPILDMSVIDYHDEKHDQMFACCGVAPEGSLRIIRNGISLERLV
RTAPIYQGITAIWTVKMSTGDSNHSFLVLSFVEETRVLSVGVSFADVTDSVGFLPDVCTL
ACGLVVDGVLVQIDQSSVRLCLPTSVAHPNGAPMSSAPCTSWSPDDIGISLGAVGQNMII
VATANPCFLIILGARSLSLYEYEIYEMQHVRLYSELSCISIPHMNNVGKDSATYPVGFDS
GNIFVIGTHKPSVEILSYVHGQGIRVLATGMISLTNTSGVSISGCIPQDVRLVVVDRLYI
LSGLRNGMLLRFEWPMTSWVSDLPGYRSSLISKSGLLKTSSPVTISPQFSGVSPYEKPKD
NDPVHLQLIAVRRIGITPVFLVPLCESLTADVIALSDRPWLVQAARHSLSYDSISFEPST
YVTPVCSAECPKGLLFVAENCLHLVEMVHSKRLNVQKFHLGGTPRKVLYHSDSRLLLVLR
TDLDKDLFSSDICCVDPLSGSVVSSFHFDLGETGKCMEFVRVGNEQILLVGTSLSVGPAI
MPNGEAESTKGRLIMLRLDLHNSDSGSMTTCLKASSSMQRFSSFCEATGCSAERMSDCSS
NPDDNSCDDIKLDDSEAWQLQFLHALTWPGVVLAICPYLDNYFLASSGNAFYVCGFQNDN
PKRIKRHAVERTRFMIVSLTTYFTRIAVGDCRDGVLFYSYHEDVKKLEQIYCDPSQRLVA
DCLLTNLDTVFVSDRKGNIAVLTSSTHLEDNPSPECNLTVCCSYFIGEIAMSIRKGSFSY
KLTAEDGFEGCDSGNNVVDMSRNGIMTGTLLGSIVIFIPISREDYELLKPVQAKLAVHPL
TAPILGNNHSDFRSRENQQAVVPTILDGDMLAQFLELTSIQQEAVLGLPCATTEMSSTSR
SHHSTVSVSQVVQLLERIHYILN
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcggttactcaggaagaatcatcttcttcatcgtcttctgccgcaaattctcaattg
aagacttctaatggtgttcactaccttgctaaatgtgttcttcctagttccgttgttctc
caagtcgttcatggccacattcgatcacctacctcaaacgacgtcgtttttggcaaggag
acatctattgaaatggtagctattagtgaggatggtgtagtgcaatctatctgcgagcag
ccagtatttggtgtgataaaagatattgctattttgccctggaataaaaattttcgtgct
caaaattcacaggtgctaggcaaggacctcctggttattgtttctgattctggaaagctc
tcctttctcacattttgcaatgaaatgcacaggttctttccagtgactcatgttcaactt
tctaatcctggcaactcaagacatcaaattggtagaatgcttgccgttgattcccttggg
cgttacattgctgtcagtgcatatgaagaacgtgtggctcttttttctgtttcagcatcc
agtgacattgatatgattgataagcgaataacttatcctcctgaacccgaggatgattta
gctgacatggaacttcagaaatcaggccaatctgtcttagttaattcactgcctgcaaag
cagataggcacggaccctgccacatcatctcattatccagttcctcgtatgcatggaact
atatggagcatgtgcttcatctcaaagcatttaaaccaattttcaaacgaagacaatcct
gtgctagctattcttgccagcagacagatatcatgcctaaatgagctgcttctgttggaa
tgggatgtcagagagaatgctgtccgcgttctttctagttttgtggaagatggtccttta
gcctatgcaattacagaagttcacggatctcaagggctcgcattgttattcagggttgga
gatatcctacttttggatctcagtgatgcttctaaccctttgtgtgtgcaaagaacaaat
ctaagctcttcaatatctattagtgaggagaagaattgcgtcgaagactctttcaggatg
caggatggtgatgatgaaggcttcattgctgctcgtgctctgctagagttgcaggactat
ggtatggattttaataagggtagtgatcctatgagcattgatgctggtctgtgcagtgct
aaatctgcggctaagtttgtgtgctcatggagttgggaacccgcaacggataaaaatcca
acaataatattttctgtggacacgggggagtatttttcgattgaaattagttgtggccct
gatggtcccaagatcaatatgtctgattgtctttataatgcccttcccagtaaagcgtta
ttgtggaccaaaaatggctttttggctgcaattgtagagatgggggatggcatggtccta
agagtggtagatggaaggctctattattcaagtccaattcaatatattgcaccaatctta
gacatgtcagttattgattaccacgatgaaaagcatgatcaaatgtttgcttgctgtgga
gtggctcctgaaggatcacttaggataatcagaaatggaataagcctggaaagactagta
aggactgctcctatctatcaaggaataactgctatttggactgttaagatgagcacagga
gattctaatcattcttttcttgtgctttcttttgttgaagaaaccagggttttgtctgtt
ggagtaagctttgctgatgtgacagattcagttggttttctacctgatgtatgtacatta
gcgtgcggtcttgtggtggatggtgtgttagttcagattgatcagagctctgtgagactt
tgcttgcctacttcagttgctcatcccaacggtgctccaatgtcttccgcgccatgtact
tcatggtctcctgatgacattgggattagcttaggtgctgttgggcaaaacatgatcatt
gtggctactgcaaatccttgctttctgataattcttggtgctagatcgttatctttgtat
gaatatgaaatatatgagatgcaacatgtgaggctttacagtgaattgtcttgcatatct
attcctcatatgaataatgtaggaaaagactcggccacttatcctgtcggttttgatagt
ggtaatatatttgtgattggtacacacaagccatcagtggaaattctatcttatgtacat
ggtcaagggatacgagttcttgctactgggatgatatcactgacaaatacatccggtgta
tctatcagtggctgtataccgcaggatgtaaggcttgtggtggttgataggttatatatt
ctctctggattaagaaatggaatgctgttacgttttgagtggcctatgacatcatgggtt
tccgacctacctggttataggtcatctttgatttcaaaatctggtttgttaaagacatca
tctccagtaacgattagtcctcaatttagtggtgtcagcccttatgaaaagccaaaagac
aatgaccctgttcatctccaactaattgccgttcgacggattggtatcactcctgtgttt
cttgttccactttgcgagtcattgactgcagatgttattgctctcagtgacaggccttgg
ttagtccaggctgcgaggcacagcctctcatatgattcaatctcatttgaaccttcaact
tatgtgactccagtatgttcagctgaatgtccaaagggtcttctatttgtagcagagaac
tgcttacacctagtggagatggtgcacagtaagaggcttaatgttcaaaagtttcatctt
ggtggaactccacgaaaggttctttatcatagtgatagcaggttactgttggttttgagg
actgatctggataaagatttattttcgtctgatatatgttgtgtggaccccctcagtggt
tcggtggtgtcttcatttcattttgacctgggggaaactggaaaatgcatggagtttgtg
cgggttgggaatgaacagatattgttggttggaaccagcttgtctgtagggccagctata
atgcctaatggagaagctgaaagtacaaaaggccgtttaattatgctccgccttgacttg
cataattcagatagtgggtcaatgacaacgtgcttgaaagcgagttcatctatgcagcga
ttttcatctttttgtgaagctactgggtgcagtgctgaaagaatgtctgattgtagcagc
aacccggatgataatagttgtgatgatataaagcttgatgattctgaagcttggcagttg
caatttcttcatgcattaacttggcctggagtagtgcttgcaatttgtccgtaccttgat
aattacttcttggcatcttctggcaatgctttctatgtatgcggctttcaaaatgataat
cctaagagaataaaaaggcatgctgttgaaagaacgcggtttatgattgtctcattgaca
acttactttactagaattgctgttggtgattgccgtgatggcgtgcttttctattcctat
catgaggatgtaaaaaagctggagcagatctattgtgatcctagtcagcgattagttgct
gattgcctgcttacaaatcttgacacagtctttgtttctgatcgtaaaggaaatattgca
gtactgacatcctcaacccatttggaagataatccaagtcccgagtgcaaccttacagtg
tgttgctcatattttataggcgaaattgcaatgagcatcaggaagggatcattctcttat
aaactgactgctgaggatggatttgaaggctgtgatagtggcaataatgttgttgatatg
tcacgcaatggtattatgactgggactctacttggaagcattgttatttttattcctatc
tccagggaggattatgagctgttgaaacctgtacaagctaaacttgcagttcatccactg
actgctcctattcttggaaacaatcatagtgattttcgtagtcgtgaaaatcagcaggct
gtggtgcctacaattctcgatggagatatgttggcccagtttttggagcttacaagcatc
caacaagaagcagtgttaggattaccttgtgctacaactgaaatgtcatcaacttctagg
tcacaccattcgaccgtttcagtcagccaggtggtgcaactccttgaacgtattcactac
atactgaattga
DBGET
integrated database retrieval system
