Amaranthus tricolor (tampala): 130813342
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Entry
130813342 CDS
T09367
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130813342
09123 Folding, sorting and degradation
03018 RNA degradation
130813342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130813342
03041 Spliceosome [BR:
atri03041
]
130813342
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130813342
mRNA degradation factors
5'-3' decay
Lsm complex
130813342
Spliceosome [BR:
atri03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130813342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
DUF150_C
Motif
Other DBs
NCBI-GeneID:
130813342
NCBI-ProteinID:
XP_057535144
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Position
5:complement(32143340..32153655)
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AA seq
99 aa
AA seq
DB search
MSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEATECLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtcgtaaggaaacagttttagatcttgccaagtttgtggacaagggggtccaa
gtcaagctgactggtggaagacaagtgaccggcacactaaagggatatgatcagttgttg
aaccttgtgctagatgaagccacagaatgtctgagagatgctgatgatccattgaagacc
actgatcagacaaggcgccttggtttgattgtatgtagaggaacagcagtgatgcttgtt
tccccaaccgatggcacggacgagatagcaaaccctttcattcagccagacggtgcttag
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