KEGG   Amaranthus tricolor (tampala): 130813342
Entry
130813342         CDS       T09367                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03018  RNA degradation
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130813342
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130813342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130813342
   03041 Spliceosome [BR:atri03041]
    130813342
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130813342
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130813342
Spliceosome [BR:atri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130813342
SSDB
Motif
Pfam: LSM Hfq DUF150_C
Other DBs
NCBI-GeneID: 130813342
NCBI-ProteinID: XP_057535144
LinkDB
Position
5:complement(32143340..32153655)
AA seq 99 aa
MSSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEATECLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtctagtcgtaaggaaacagttttagatcttgccaagtttgtggacaagggggtccaa
gtcaagctgactggtggaagacaagtgaccggcacactaaagggatatgatcagttgttg
aaccttgtgctagatgaagccacagaatgtctgagagatgctgatgatccattgaagacc
actgatcagacaaggcgccttggtttgattgtatgtagaggaacagcagtgatgcttgtt
tccccaaccgatggcacggacgagatagcaaaccctttcattcagccagacggtgcttag

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