Amaranthus tricolor (tampala): 130813781
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Entry
130813781 CDS
T09367
Name
(RefSeq) nuclear pore complex protein NUP107 isoform X1
KO
K14301
nuclear pore complex protein Nup107
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130813781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130813781
03036 Chromosome and associated proteins [BR:
atri03036
]
130813781
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130813781
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130813781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
DUF1186
Motif
Other DBs
NCBI-GeneID:
130813781
NCBI-ProteinID:
XP_057535634
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All DBs
Position
5:22555007..22582573
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AA seq
1077 aa
AA seq
DB search
MDVDMETSPSYFDPHDLNIREQYRRYGKISSTSPLRSSPASSFGEGRMSNTALYLEDIKQ
EAESLDYRETTPSRTHSAYKGRSFDVQLTPELHSAIDSSHQGGIYSSKACKLEEDVHDAS
ESTFSLFASLLDSASQGLISMPDLILQFEKSCRDVFESMRYGSSERYRIVEDRLMRQKAQ
LLLDEAASWSLLWYIYGKGSEEIPEDLIMAPTTSHLEACQFVANDLTAQLCLRIVLWLED
LASKALDLESKVHGSHVGTYLPSSGIWHNTQRHLKKNEIGLKTVKHLDFDAPTRENALPL
PDDRKQDESLLEDVWILLRAGRLEEACELCRSAGQPWRAASLCPFGGMDLVPSVEALSKN
GKNRILQAIELESGISRQWRLWKWACYSASERIAEQGGGKYEAAVYAAQCSNLKRMLPTC
MDWESACWAMAKSWLDVKVDIELASLQPGRMELLKNFEDAYGASLDQKVGSCGRPDNWPL
QILNQQPRNLSSLIQKLHSSDMVREAVARGCKEQHRQIEMILMSGDIPRLLDLIWSWIAP
SDDDQNAFRPHGDPHMIRFGAHLVLVLRLLFGDEMRDNFKEKLMNVGDLILNIYAMYLFA
QQHEELVGIYASHLASHRCIDLFVHMMELRMNASIHVKYKLFLSAMEYLPFFPGDESKGS
FEEIIESILSRSREIKVCKYDNSEDVVEQHRLQSLDKAMAIQWLCFEPPSTIDDVETIGA
RLLLRALMHSNILFREFALISMWRVPAMPIGAHKLLSFLAEPLKQPTENLLAFDDHDVSD
YLKEFRDWSEYYSCDATYRNWLKYELENAEVSSCELSMEEKQKVIGAAREALSSSLLLLL
RKKNPWLVPGEDQIYDTTGPVFLELHATSILCLPSGECMCPDATLCATLMSALYSSVTEE
VVSSRQLTVDVKVSPKNNFCVDVTLRCLAVEGDGLGPHELNDGGVLASVMATGFKGELPR
FQAGVTMEISRLDAWYLNAEGSQKDPAAYIVRGLCRRCCLPEIILRCMQVSVSLVELNEV
PERYDELIELVACPETGFLYLFSQQQLQEFLLFEREYTICLMELQEESPKGAREGLY
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggatatggagacttcgccaagctacttcgatccccatgacctcaacatcagg
gagcagtatcgtcgttacggaaagataagtagcacttcaccacttcgaagtagtcctgcc
tctagctttggtgaaggtaggatgtccaatactgcattgtatctagaagacattaaacaa
gaggctgaaagcctggattatagagaaacaactccttcacgaacacattcagcttacaaa
ggaagatcatttgatgttcagttaactccagaactgcatagtgccattgactcatctcat
caaggtggaatttattcatcaaaagcgtgcaaacttgaggaggatgtacatgatgctagt
gaatctacattctctttgtttgcatctcttctggattctgccagtcaagggcttatatct
atgcctgatcttattcttcagtttgagaaatcatgccgtgatgtttttgaatctatgagg
tatggctctagtgagagatatcggattgtagaagacagattaatgcgacaaaaagctcaa
ttattacttgacgaagctgcttcgtggtcacttctttggtatatctatggaaaaggaagt
gaagaaattcctgaagatcttattatggccccgacaacttcacatctggaagcttgtcag
tttgttgccaatgatctcacagcacaattgtgccttcgaattgttctgtggcttgaagat
ctagcgtctaaagccctagacttggagagcaaggtgcatggatctcatgttggtacttat
cttccaagctctggcatttggcataatactcagcgacatcttaagaaaaatgaaataggt
ttaaaaactgtcaaacacttggattttgatgctccaacacgagaaaatgcgctgccgttg
ccggatgatagaaaacaagatgaatctctattggaagatgtttggattctgttaagagct
ggaagattggaagaagcatgtgagctctgcagatctgcaggacagccatggagggctgca
agtttatgcccttttggaggaatggacctagtcccatctgttgaagcattgtcgaagaat
ggaaaaaacagaatcctacaagcgattgaactggaaagtggaatcagtcgccagtggcgc
ctttggaaatgggcatgttactctgcctctgagaggattgcagagcagggaggtggaaaa
tatgaagcagcagtatatgcagctcagtgtagcaacttgaagcgtatgcttccaacatgc
atggactgggagtcagcatgttgggcaatggccaagtcatggcttgatgtcaaggtggac
atagaattggctagtttgcagcctggacgaatggaactcctgaaaaatttcgaagatgct
tatggtgctagtcttgatcaaaaagttggcagttgtgggaggccagacaactggccatta
caaattctgaatcagcaaccaaggaatctttcttctcttattcaaaaacttcactccagt
gacatggtacgtgaagcggttgctcgtggatgcaaagagcagcaccgccagattgagatg
attcttatgtccggagatatacctcgtttattagaccttatatggtcatggattgcaccc
tcagatgatgatcaaaatgccttcaggcctcacggagatccgcatatgattcgttttgga
gctcatttagtactggtgcttagacttttgtttggagatgaaatgagggataattttaaa
gagaaactaatgaatgttggtgatcttattcttaacatctatgctatgtacctatttgcg
caacaacatgaggagttggttggtatttatgcttcacacctggcatcccatcgttgcatt
gatctatttgtgcacatgatggagttacggatgaatgccagcatacatgttaagtacaaa
ttgtttctatccgcaatggagtatttgccgttttttcccggagatgaatcaaaaggaagc
tttgaggaaattattgaaagcatattgtcaagatctcgagaaatcaaagtttgcaagtac
gataactcagaagatgttgtggaacagcacaggttgcagtcacttgataaagctatggcc
atacagtggctctgctttgaacccccgtccacaattgatgatgttgaaaccattggtgca
aggcttcttctacgagctcttatgcacagtaacatactcttcagagaatttgctttaata
tccatgtggagggtgccagcgatgcccattggtgctcacaaacttcttagttttcttgct
gaacctttgaagcaacccactgaaaatcttttagcatttgatgatcatgacgtttctgac
tacctgaaggagtttagagactggagtgagtactactcctgtgatgcaacatatcgcaac
tggctaaaatatgaattggagaatgcagaagtttcttcatgtgagctatcgatggaagaa
aaacagaaagtcattggagctgcaagagaggcactcagctcttcactgttactcctacta
aggaagaaaaatccttggttggttccaggtgaagatcaaatttatgacacaacaggacct
gtgttccttgaattacatgccacatcaatcttgtgtttgccttctggtgaatgtatgtgt
ccagatgccactttatgtgcaacattgatgagtgctctatactcttcggtgacagaggaa
gttgtatctagtcggcaattgacggttgacgtgaaggtttctcctaagaataatttctgt
gttgatgttacgctccgctgcttggctgtggaaggtgatggattaggtcctcatgaactg
aatgatggtggagttcttgccagtgtgatggcaacaggctttaaaggtgaattgcctcga
tttcaagctggtgtcacaatggaaatttcaagattggatgcttggtatttaaatgctgaa
ggctcgcagaaagacccagcagcatacattgtgcgtggtctctgccgtaggtgctgtctt
ccggaaataattctacgctgcatgcaggtgtctgtgtcattggtggagttgaatgaggtt
ccagagaggtatgatgagttgattgagcttgttgcttgtccggaaacagggtttctttat
ttatttagtcagcagcaactgcaggaatttctgctctttgaaagggagtatacaatatgc
ttgatggagcttcaagaggaaagcccaaagggcgcccgcgaagggttgtactaa
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