Amaranthus tricolor (tampala): 130814003
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Entry
130814003 CDS
T09367
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03430
Mismatch repair
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130814003
03460 Fanconi anemia pathway
130814003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130814003
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
130814003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
130814003
NCBI-ProteinID:
XP_057535952
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Position
5:complement(26986937..27003878)
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AA seq
917 aa
AA seq
DB search
MFSASEMAEKTPLKANSPVIKPINKGVIHKICAGQVILDLSSAIKELVENSLDAGATSIE
IALKDYGEGWFQVIDNGCGISPSDFKALALKHHTSKLADFSDLQMLTTFGFRGEALSSLC
ALGSLTIETRTKNESVATHLTFDHSGHLIAEKKTARKVGTTVTVQKLFSNLPVRSKEFSR
NIRKEYGKLISLLNAYAVIAKGVRLVCTNMSGKNARSVVLKTQGSGSLKDNIIALFGMST
FTCLEPLNISMSEDCRVEGFVSKSGNGSGRNMGDRQFFYVNGRPVDMPKVSKLVNELYRG
ANSRQYPIAILNFIFPVMAYDVNVTPDKRKVFFSDEVSFLQYLREALGMIYSASSVTYSV
MNVTVPDEKDNKSSSCPVGLQQTPVQPSLERAQAELCDKKQAAGHDIIPDPIGKDSQILS
FGLHNNAQNSQDRDFSLKVHSIKKTYIDSHGRDNKMTSVSIDEQCLKEVESDVAVDYGLS
NRSSLVQLSLNKFVTLQKRKYENMSMPLSEAPILRNESIQCNEKDDVESPFAAASSVTKF
HRVIDSAELFGHQLSKHSETAADLCKTSRPFLNDGDACLDVLTEEVRVQSERSPVTKAFI
PSVSRKENAECVLKDESLEAQPTEGFTPSLVLNPSFTLQFDMKGLLERRKQKFSLLHSSF
DVHTQTKARCYAAATLELSQADNEEWKARALAAATTELERLFRKRDFSRMKVIGQFNLGF
IIGKLDEDLFIVDQHAADEKYNFERLSESTIMNQQPLLRPIRLELSLEEEIVASMHMDII
RKNGFSLEEDLEASPGNRFMLKTVPFSKNVTFGVEDVKELISTLSDGQGECSMMSTYKSD
TLDSICPSRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHL
INLAVVRDREAPEINSL
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcatcggaaatggcggaaaaaactccattaaaggctaattcgccggttata
aagcccataaacaagggtgtgatccataaaatatgtgcgggtcaagtaattttggatctt
tcttcggccattaaagagcttgttgagaatagcttggatgctggtgctactagtatcgag
attgctttgaaggattatggtgaaggttggtttcaagtcatcgataatggttgcggcatt
tcccccagcgatttcaaggctcttgccctcaagcatcatacctcaaaattggcagatttt
tctgacctacaaatgctcaccacatttggctttagaggagaggcattgagttccctttgt
gcacttgggagtttgacaatagaaactagaacaaaaaatgaatcagttgctacacacttg
acgtttgaccactctggacacttgatagctgaaaagaagacagcacgaaaagttggtact
actgtaactgttcagaagttgttctcaaatttgcccgtacgcagcaaagaattcagtcga
aatattcgtaaggaatacgggaagcttatttctttattgaatgcgtacgctgtcattgca
aaaggagttcgacttgtctgcaccaacatgtctggtaagaatgcaagatcagtggtcttg
aaaacccaaggaagtggatcacttaaagataacattatagcactgtttggcatgagcact
tttacgtgtttggagcctcttaatatctccatgtcggaggattgcagagttgagggtttt
gtctctaaatctggtaatggcagtggaagaaatatgggtgacagacaattcttttatgta
aatggtcgacctgttgatatgccaaaagttagtaaacttgtaaatgagttatatagaggt
gcaaactcacgtcaatatcctattgcaatcctgaacttcatttttcccgttatggcatat
gatgtgaatgtcacaccagataagaggaaagtgtttttctcagatgaagtctcctttcta
caatatctgagagaagcattagggatgatctattcggctagttctgtcacttacagtgtc
atgaatgtaactgtacctgatgaaaaagataataaatcatcttcttgcccggtgggattg
cagcagactcctgtgcagccgtctctcgaaagagctcaggctgaattatgtgacaaaaag
caagctgctggacatgatattattccagatcctattgggaaggatagccaaattttatct
tttggcctccacaacaatgctcaaaattcacaggacagggattttagtcttaaggtccac
agcattaagaagacatatattgattcacatggccgtgacaacaaaatgactagtgttagt
atcgatgaacaatgccttaaagaggttgaaagtgatgttgcagttgattatggtttgagc
aataggtcgagcttagttcaattgtcactcaacaagtttgtcactctgcaaaagagaaag
tatgaaaacatgtctatgcctttatcagaagccccaatattgagaaacgaatctattcaa
tgcaatgaaaaagatgatgtagaatcaccttttgctgctgcaagctcagtcaccaagttc
catcgtgttatagactctgctgagctttttggacaccaattatccaagcattctgaaact
gctgcagatttgtgtaaaacaagtagaccctttttaaatgatggtgatgcctgcctggat
gtgttaacagaggaagtcagggttcaaagcgaaagatcgcctgttaccaaagcatttata
ccaagtgtttcaaggaaagaaaatgcagaatgtgtgctaaaagatgaatcacttgaagct
cagccaacggaaggtttcactccgtcgttggttttaaatccatccttcacgttgcaattt
gatatgaaaggcctcttggaaaggcggaaacagaagttttcactattgcattcaagcttt
gatgttcatacacagacaaaagcaaggtgctatgctgctgcaacactagagctttctcaa
gcagataatgaagaatggaaagcaagggctcttgctgctgcaactacagaactggaaaga
ctttttagaaaaagagactttagcaggatgaaggtaattgggcaattcaatctaggtttt
ataattgggaagctagatgaagacttatttattgtggatcagcatgcagctgatgagaaa
tataattttgagcggctctcagaatcaacaattatgaaccagcagcctttactgaggcca
atcaggttggagttgtctttggaggaggaaatagttgcctcaatgcatatggatataatc
aggaaaaatggtttttccctggaagaagatcttgaggcatctcctggaaaccgttttatg
ttaaaaactgtgcccttcagtaaaaatgtaacatttggagttgaagatgtgaaagagctt
atttccactctttcggatggtcaaggagaatgctcaatgatgagtacctataaatcggat
accttagactcgatttgcccttcaagagttcgagcaatgcttgcatcacgtgcctgcaga
tcgtccattatgattggtgatgcacttggaaggaatgaaatgcagaagatcctcgagcac
ttggctgaactgaagtctccgtggaactgcccgcatggtagacccaccatgcggcatttg
atcaatttggctgtagtccgtgatagagaagctccagagattaatagtctgtga
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