Amaranthus tricolor (tampala): 130814083
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Entry
130814083 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130814083 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130814083
03015 mRNA surveillance pathway
130814083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130814083
03041 Spliceosome [BR:
atri03041
]
130814083
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130814083
Spliceosome [BR:
atri03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
130814083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Cornifin
Motif
Other DBs
NCBI-GeneID:
130814083
NCBI-ProteinID:
XP_057536065
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Position
5:complement(16117355..16124837)
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AA seq
888 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKTQKFAPELEHLVDITKVKMDVIKPWIAKRVTEFL
EGFEDEVLINFIYTLLEGKEVNGKKIQIQLTGFMEKNTGKFMKELWALLLSAQKNASGVP
QQFLDAKEEETRKKMVETDRIFNEIQRREEKEVRESQQEKERQMDDGTGNNRAEDSNGRR
ERGSGVQSGDEKGADAQNGFRGRSRASNSPSDHSQSPHREKSLSRSISVSPGAKKRSVSP
QGKRRPPRRSITPIRQSSRESMSPRRRSFSRRSPSPLRRRARSPVRRRSPSPFRRRSPSP
ARRSPSPSRRRSRSPVRRWSRSPAKRLSRSPVRHRSPPRRRRSPSPWRRRSPSPGRHRSP
PPSRRSRRSTSSPRSRSPVKSRSPSPFRRRFYSPARRSSYAARRRSPSPAPRHRSPYPAR
RRSPSPTRRRSPSPTRRRSPSPAQRRSPSPAKRRSPSPGRRKTSYPARHRSPSPRSRRSL
SPVDRRSLSPIQERSPVPGRRRTSTLTPSRSPSPASQLSGSPVRHSSASPVKMTSPRLQK
SLNGSPRERNRNLEPATIMSRRQPISLSPQRDHSIRRESNRKVPPVAASPEKSPHVEVRN
QNFDKDRRLASLENRVGEKLVPNGSQSPIKSRDQRVRRVSPETTVERQQSDRKYEDKKLE
ERKSGRSSVVKQRESPDRPTSEEASLKEVHHLKKSPHRVSLTGDRPDTYTGDFSKFDEKR
NSQAKDVGNNMSESLVKSHKKRRSSAYSDSESEGSDKHTGKRKRRRSKRKEVTSDDTSSE
SEIEDRKEAKRKKKEERKARKEERRRRREERRRKREEKRASKRKPKSNDADALSSGPENI
EKDVNTSNDGRRKKYSSEEETESQKKRLEIELREKALESLRAKKGISH
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcggattctttcggggtacatcggccgatcaagatactcggttctcgaataag
caggcgaagttgcttaagacgcagaagtttgctccagaactggaacatttggttgatatt
acgaaagtgaaaatggatgtcatcaagccgtggattgctaaaagagttactgaatttctc
gaaggatttgaagatgaagtgctcattaacttcatctatactcttctcgaaggaaaggag
gttaatggaaagaagatccagattcaacttacgggttttatggaaaaaaataccggtaag
ttcatgaaagaactttgggcacttctcctcagtgcccagaagaatgctagtggtgttccc
caacaattcctggatgctaaagaggaggaaactaggaagaaaatggtagagacggatcgt
atctttaatgaaatccagagaagggaggaaaaggaagttagagagtcccagcaagagaaa
gagaggcaaatggatgatgggaccggaaataatcgtgctgaggattcaaatggaaggcga
gaaagaggttctggtgtgcagtctggagatgaaaaaggagctgatgcgcaaaatggattt
agaggaagatctagggcatctaattcaccatctgatcattcacaatcgcctcatcgtgaa
aaaagtctgtcgaggagtatatctgtttcccctggggcaaagaagcgatcagtttcacct
caagggaaacgtcggcctccacgaagatccatcactcctataagacagtcttctcgagag
tccatgtctccaaggcggaggtctttttctagaaggtcaccctctcccttgaggcgtaga
gcccgttctcctgttcggagaaggtctccatctccttttcgacgtcggtcaccttctcct
gctaggaggtcaccatctccttctaggcgtcgatcacgatcacctgttaggcgttggtca
cggtcacctgctaagcgtctgtcacggtcacctgttaggcaccgctctcctcccaggcgg
cgcagatcaccctctccttggcgccggcgatcaccatcccctgggagacacagatcacct
ccccctagccgtcgtagtaggagatccacttcaagtccaaggtctcggtccccagtcaag
agcagatctccatctccttttcgacgtcggttctactctcctgccagaaggtcttcctat
gcagcccggcgcaggtctccatctcctgcccctcggcacagatctccttatcccgctcgg
cgcaggtctccatctcccacccggcgcaggtctccatctcccacccggcgcaggtctcca
tctcctgctcagcgaaggtctccatctcctgccaagcgaagatctccatctcctggccgt
cgtaagacttcatatcctgctcggcataggtctccttcgccaaggagccgcagatcttta
tctcctgtggatcgtagatcattatctccaatacaggaaaggtcacctgttccaggtcgc
aggagaacaagtactctaactcccagcaggtctccatcacctgctagtcaattatcaggg
tcacctgtcaggcatagttctgcttcaccagttaaaatgacatcaccccggcttcagaaa
tctcttaatgggtcccctcgagaaagaaacaggaaccttgaacctgctacaataatgtct
cgtagacaacctatttcactgtcccctcagagagatcattctataagaagggagtcgaac
agaaaagtgccacctgttgctgcttctccagagaagtcgccacatgtagaagtgcgaaac
cagaatttcgataaagataggaggttggcgagtcttgaaaatagagttggagagaaatta
gtgccgaatggtagtcaaagtcctattaaatcaagagaccagagagttcgccgtgtaagc
ccagaaacaactgtagagagacaacaaagtgacaggaagtacgaggacaagaaattagaa
gaaagaaaatctggacgctcatccgttgtcaagcaaagggagtctcctgatcgtcctacc
agtgaagaagcatctttgaaggaagttcatcatctaaaaaagtcaccacacagagtttct
ttgacaggcgataggcctgacacttatactggtgacttttccaaatttgatgagaagaga
aattcccaagcgaaagatgttgggaacaatatgtctgagtccttggtaaagtcacataaa
aagcggagaagctctgcttactctgattctgaatcagagggaagtgacaagcatactgga
aaaaggaagcgtagaaggtcaaaacgaaaggaagtcacatcggatgatacaagctctgaa
tctgagatagaggatagaaaggaagctaagagaaaaaagaaggaagagaggaaagcacgt
aaggaggagcgacgtagacgccgtgaggagcggcgtcggaagagagaggagaagcgtgct
agtaagaggaagccaaagtcaaatgatgctgatgctttgtcttctggtccagaaaatatt
gagaaggatgtcaatacatcaaatgatggacgtcgtaagaagtattcaagtgaagaagag
actgaatcacagaaaaagagacttgagattgaattacgtgaaaaggctctcgagtcattg
agggcaaaaaagggcattagccattaa
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