Amaranthus tricolor (tampala): 130814232
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Entry
130814232 CDS
T09367
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04142
Lysosome
atri04144
Endocytosis
atri05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130814232
04142 Lysosome
130814232
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
130814232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atri04131
]
130814232
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atri04147
]
130814232
Membrane trafficking [BR:
atri04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
130814232
Exosome [BR:
atri04147
]
Exosomal proteins
Proteins found in most exosomes
130814232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
130814232
NCBI-ProteinID:
XP_057536296
LinkDB
All DBs
Position
5:complement(12256827..12271633)
Genome browser
AA seq
1704 aa
AA seq
DB search
MAAANAPIVMQEALTLPSVGINPQFITFTHVTMESDKYICVRETSPQNSVVIIDMNLPNQ
PLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIFNIEAKTKIKSHQMSEMVVFWKWI
TPKMLGLVTQTSVYHWSIEGESEPVKMFERTANLANNQIINYRCDPSEKWLVLIGIAPGA
PERPQLVKGNMQLYSVDQQRSQALEAHAASFAQFKVPGNENPSTLICFASKTSNAGQVTS
KLHVIELGAQPGKPGFSKKQADLFFPPDFADDFPVSMQVSQKYGLIYVITKLGLLFVYDL
ETASAVYRNRISPDPIFLTSEATSVGGFYAVNRRGQVLLATVNEATIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKANLPEHGHLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYLQALKHYTELPDIKRVIVNTHAI
EPQALVEFFGTLSKEWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDGCIKLFEQFK
SYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEA
KLPDARPLINVCDRFGFVPDLTHFLYRNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSTDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTSKNSLFKLQARY
VVERMDGDLWEKVLTPDNEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVDVLLDNIRNIDRAVEFAFRVEEDAVWTQVAKAQLREGLVSDAIE
SFIRAEDATHFLEVIKAAGDADVYHDMVRYLLMVRQKVKEPKVDSELIYAYAKIDRLSDI
EEFILMPNVANLQNVGDRLYDEALYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARK
ANSAKTWKEVCFACVDAEEFRLAQICGLNVIIQVDDLEEVSEYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTLLYI
QYDEYDNAATTVMNHSPEAWDHMQFKDIIVKVANVELYYKAVHFYLQEHPDLINDVLNVL
ALRVDHTRVVDIMRKAGQLPLVKPYMVAVQSNNVSAVNEALNEIYLEEEDYDRLRESIDL
HDNFDQIGLAQKVEKHELLEMRRIAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRADVALELAWLNNMIDFAFPYLLQFIREY
TGKVDELIKDKLEAQKEVKAKEAEEKDLVAQQNMYAQLLPLALPAPPMPGMGGGAMGGGF
APTPPMGMGMPPMPAFGMPPMGSY
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgctaatgctcctattgtcatgcaagaagcccttacgctaccaagcgtaggg
atcaatccacagttcattacgttcactcatgtaaccatggagtcagacaagtacatttgt
gtaagggagacttcgccgcaaaatagtgtcgttatcattgatatgaacttgccaaatcag
cccttgaggcgacccatcactgctgattctgcgttgatgaaccctaactcaagaattctt
gcccttaaagcgcaagttccggggactacacaggaccacctgcagatcttcaatattgaa
gcaaaaacaaagataaagtcccatcaaatgtccgaaatggttgtcttctggaaatggatc
acacccaagatgttaggccttgtaacacagacatcagtctaccattggtcaattgagggt
gaatctgaaccagtaaaaatgtttgagcggactgcaaatttggccaacaatcaaataatt
aactaccgctgtgatccgtcagagaaatggctggttctgattggaattgctcctggcgct
cctgagaggccacaattggtgaagggtaacatgcaactttattcagtggatcaacagcgt
agtcaagctcttgaagctcatgcagcatcatttgcgcaatttaaggttcctggaaatgaa
aatccatctactcttatttgctttgctagcaagacctctaatgctggtcaagttacgtca
aagttgcatgtcattgaacttggtgctcagcctgggaaacccggatttagcaagaaacag
gccgatctcttcttccctcctgattttgcagatgactttcctgtgtctatgcaggtatcc
cagaagtatgggttaatatatgtaatcacgaagcttggtcttctgtttgtatatgatctg
gagacagctagtgcggtttacagaaacaggattagtcctgatccaatctttttgacttct
gaagctacgtcagttggtggattttatgctgtcaacagacgaggtcaggtgttgttagcg
acagtaaatgaagcaacaatagtgccatttgttagtggccagcttaacaatttggagctt
gcagttaatcttgcaaagcgtggaaaccttccaggtgctgaaaacttggttgtccagcga
tttcaggaattatttgctcagacaaagtataaggaggcagctgagcttgctgcagagtct
ccacagggccttttgcgtactcctgatactgttgctaagttccagagcgttcctgtacaa
gctgggcaaacaccaccattgttgcagtactttggaacgttgttaacgagaggaaaactt
aatgcatttgagtcactggaattgtctagactggttgtaaatcagaacaaaaagaatctg
ttagagaattggttggcagaggacaaacttgaatgcagtgaagagcttggtgatcttgtg
aagacagtggataatgaccttgctctcaaaatatacatcaaagctagggcaactccaaaa
gttgttgctgcatttgctgagaggagggagtttgataagatattgatatattcaaagcag
gttggatacacccccgattatttgttcctcctgcagacaattttacggactgaccctcag
ggagctgttaattttgctttgatgatgtctcaaatggagggaggatgtcctgttgattac
aatactattactgatctgttccttcagagaaatttgattcgtgaagcaacagcgtttttg
ctggatgtgctgaaggcaaacctaccagaacatggccatctccaaactaaagttctggaa
atcaatcttgtcacatttcccaatgtagcagatgcaatcttagctaatggcatgttcagc
cattatgatcgtccccgaatcgcacaactttgtgaaaaggctggattgtatttgcaggct
cttaaacattacactgaactgccagacattaagcgtgtcatagttaatacgcatgccatt
gagcctcaggcactagtggagttctttggaacactttctaaggagtgggctcttgagtgt
atgaaagatcttttattggttaatctcagagggaatttgcagataattgtgcaggttgcc
aaagaatattgtgagcaattgggtgttgatggttgcataaagctctttgagcagttcaaa
tcttatgaaggcctatatttcttcttgggttcatatttgagctccagtgaggatccagaa
attcattttaagtacattgaagcagcagctaaaaccgggcaaatcaaggaagtggaacgt
gtaactcgtgaatccaacttctatgatcccgagaaaacaaagaatttcttgatggaagcc
aagctgccagatgcaaggcctctgataaatgtgtgcgaccgatttgggtttgtacctgat
cttacccattttctctacagaaacaacatgcttcgttacattgaaggctatgtacagaag
gttaatcctggcaatgcccctctagttgtgggacagctgctggatgatgaatgccctgaa
gattttatcaaaggccttattctctcggtgcgatctcttctacctgttgagcctcttgtg
gaggaatgtgagaagaggaatcgtctgcgcttgctcacccagtttctggagcaccttgtt
agtgaggggagtactgatgtacatgttcataatgctctgggtaaaattatcattgacagc
aataacaatccagagcactttctcacaaccaatccatactatgattcccgtgtagtgggt
aaatactgcgagaaaagggatcctactcttgctgttgttgcatatagacggggacagtgt
gatgatgagctaatcaatgtcacgagtaagaattctttattcaaactgcaggccagatat
gttgtggagagaatggacggtgatctatgggagaaggtcctcactccagacaacgagtac
aggaggcaattgatagatcaagttgtttcaacagctttgccagaaagcaagagccctgaa
caggtttctgctgctgtcaaggcctttatgacagctgatcttccccatgagctgatcgag
cttctggaaaagatagtacttcaaaactccgctttcagcggaaactttaatttgcagaat
ttgcttatacttacagctatcaaggcagatccttctagagtcatggattacataaatagg
ttggacaactttgacggacctgctgttggagaggttgcagtggaagcacagttgtatgaa
gaggcatttgcaatctttaagaaatttaacttaaatgtccaggctgtggatgtgctgctg
gacaatatccgcaacattgatcgggctgtggaatttgcattccgtgttgaagaggatgct
gtatggactcaggttgctaaggcccagctcagggaaggtcttgtcagtgacgctatagag
tcatttatccgcgctgaggatgcaacccatttcttggaagttattaaagctgctggggat
gcagatgtctatcatgacatggtgaggtatcttttgatggttaggcagaaggttaaagag
cccaaggttgacagtgagcttatatatgcatacgcgaaaattgatagactcagtgatatt
gaagagttcattcttatgcccaatgttgcgaatcttcaaaatgttggagatcgtttatac
gatgaagctttatacgaggcggcaaagattatctatgcattcatttctaactgggctaaa
ctagcagttacgctcgtgaaattgaaacagttccaaggtgctgtggatgcagctcgcaag
gctaacagtgcaaagacatggaaggaagtttgttttgcttgtgtggatgctgaggaattc
cggctggctcagatatgtggtcttaatgtcatcatacaggtggatgatctagaagaggtt
agtgaatactatcaaaacaggggatgctttaatgagctcatctccctgatggaaagtgga
ttgggactggaacgtgcacatatgggtatcttcactgagttgggagttctctacgccaga
tatcgtcctgagaagctcatggaacatattaaattgtttgcgactcgtcttaacatacct
aagctgattagggcttgtgatgagcaacaacattggaaggagcttactttattgtatatt
cagtatgatgaatatgacaatgctgctactactgtgatgaatcattctccggaggcatgg
gatcacatgcagttcaaagacattattgttaaggttgcaaatgtggagctgtactacaag
gcagtacacttctacttgcaagagcatcctgatcttatcaatgacgtgttaaatgttctt
gcactacgtgtggaccatactcgtgttgtggacatcatgagaaaggctggtcaacttcct
cttgtgaagccatacatggtagctgttcaaagcaacaatgtatctgccgtgaatgaagca
ctgaatgaaatctatcttgaggaagaggactacgatagacttcgcgagtcgatagatttg
catgataactttgaccagattggtcttgctcaaaaggtggagaagcatgagttgctagaa
atgagacgtattgcagcttacatatacaaaaaggccggtagatggaagcagtctattgct
ttgtcaaagaaagacaatctgtacaaggatgcaatggagactgcttcccaatctggtgat
cgtgaactcgctgaggagcttcttgtgtacttcattgagcagggaaagaaagaatgtttt
gcatcatgtctctttgtttgttacgatttaatcagagctgatgttgcattggagcttgca
tggttaaacaatatgattgactttgccttcccttacctcctacagtttattcgtgagtac
acgggtaaagtcgatgagctaatcaaggacaaacttgaagcccaaaaagaggtcaaggca
aaagaagcagaggaaaaagatttggttgcacaacagaacatgtatgcacagttactccca
cttgctttaccggcaccgccaatgccaggaatgggaggaggtgcaatgggtggcggtttt
gctccaacaccacctatgggcatgggcatgcctccaatgcctgccttcggaatgcctccg
atgggctcatactag
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integrated database retrieval system
