KEGG   Amaranthus tricolor (tampala): 130814332
Entry
130814332         CDS       T09367                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03013  Nucleocytoplasmic transport
atri03015  mRNA surveillance pathway
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130814332
  09122 Translation
   03013 Nucleocytoplasmic transport
    130814332
   03015 mRNA surveillance pathway
    130814332
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130814332
   03041 Spliceosome [BR:atri03041]
    130814332
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     130814332
    TREX complex
     130814332
Spliceosome [BR:atri03041]
 Complex C
  Other components
   EJC/TREX
    130814332
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130814332
SSDB
Motif
Pfam: RRM_1 FoP_duplication DUF5549 DUF5320 RRM_3
Other DBs
NCBI-GeneID: 130814332
NCBI-ProteinID: XP_057536435
LinkDB
Position
5:complement(17919914..17925011)
AA seq 241 aa
MESHLNMSLDDLIKMNKSSSGRGGGGGGGGGGGRGRGRSGAAPSRRFANRTANRSTPYSL
PMSKAPETFWQHDMFGNQGGASSLETGTKLYISNLDYGVSNEDIKELFSEVGDLKRFSVH
YDRSGRSKGTAEVVYSRRGDALAAVKRYNNVELDGKPMKIEIVGTNVASAGALPPAANGI
GRNPLGPRSGQGRGGAMGRPRGGRGFGRGRGRGRDRVEKVVSAEDLDADLDKYHSESMQT
N
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagagccatttaaatatgtccctagacgatctcatcaagatgaacaaatcttcttcc
ggtcgtggcggcggtggcggtggcggtggcggtggtggaagaggacgaggtcgttccggc
gctgctccttctagaagattcgctaatcgtactgctaatcggtctactccgtattctctt
cctatgtctaaggcgccagaaacgttttggcagcatgatatgtttggtaatcaaggtgga
gcgtcttctcttgagactggaactaagctttacatctctaatttggattacggtgtttct
aatgaagatatcaaggagctgttttcagaggttggtgatctgaagcgattttctgtgcat
tatgatagaagcggaagatcaaaggggactgcggaagttgtttattcgcggaggggagat
gccctggctgctgtcaagaggtataacaatgtggagcttgatggaaagccaatgaaaatc
gagattgtggggacaaatgttgcgtctgcaggagcactgcctccagctgctaacggaatt
ggtcgaaatccacttggtccaagaagtggacaaggaagaggaggtgcaatgggacgccca
cgtggtggccgtggttttggcagaggccgcggcagaggaagagatcgggttgagaaggtg
gtatctgcagaagatctggatgccgacttggacaagtaccactcagaatcaatgcagaca
aactaa

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