Amaranthus tricolor (tampala): 130814536
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Entry
130814536 CDS
T09367
Name
(RefSeq) exosome complex exonuclease RRP46 homolog isoform X1
KO
K12590
exosome complex component RRP46
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130814536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130814536
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130814536
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130814536
NCBI-ProteinID:
XP_057536615
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All DBs
Position
6:4791755..4797955
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AA seq
242 aa
AA seq
DB search
MGVDREDGRTPTMLKPLSCSRNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
SIEVIWKPKTGQIGKLEREYEMILKRTLQSICILTVNPNTTTSVIVQVVHDDGSLLPCAI
NAACAALVDAGIPLKHLAVAICCCLAEDGCVMLDPTKQEEQKMKAFVYLVFPNSVLSVLQ
VSSNTNEEPVEHGIITSVTHGAMSVENYINCLRIGRAAASKLSDFLRSRLQNPLASDLLS
HT
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgggggttgacagggaagacggtcgcacgcccacaatgttgaaacctttatcttgttct
agaaacgtccttaatcgcgctcacggctctgctagttggtctcaaggtgatacaaaagtg
ttagctgcagtttatggaccaaaagctgggactaagaagaatgaaaatccagaaaaagct
tcaattgaagtaatttggaagcctaaaacagggcaaatcgggaaattggagagggaatat
gagatgatactaaagagaacattacaaagcatatgtattttgactgtcaacccaaataca
accacatcagtaattgttcaggttgtccatgacgatggctctcttcttccttgcgcaatt
aatgctgcttgtgctgctcttgtggatgcgggaatccctctgaagcatcttgctgttgca
atatgctgttgtttggccgaagatggatgtgtgatgttggatcctacaaaacaagaggag
cagaaaatgaaagcatttgtttatttggttttcccaaactccgtgctatcagttctgcaa
gtgtcgagcaatacaaatgaggaaccagtggagcatgggattatcacatctgttacccat
ggcgcgatgtcagttgaaaattatattaactgtttaaggattggacgagctgcagcatca
aaactttctgattttctaagaagccgccttcaaaatccacttgccagtgatttactaagt
catacttga
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