Amaranthus tricolor (tampala): 130814633
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Entry
130814633 CDS
T09367
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130814633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130814633
03019 Messenger RNA biogenesis [BR:
atri03019
]
130814633
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130814633
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130814633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
130814633
NCBI-ProteinID:
XP_057536743
LinkDB
All DBs
Position
6:28993242..29001536
Genome browser
AA seq
946 aa
AA seq
DB search
MPIDAVPKPAAPSPILDRFRLLLKEREADFRVSNGFNDVVSVPPPSTDEIVRFYEDVLAE
LTFNSKPIITDLTIIAGEQREHAEGIADAICARVLEVPVDQKLPSLYLLDSIVKNIGREY
ARHFASRLPEVFCEVYRQIPPNLHTSMRHLFGTWSTVFPSTVLLKIEDELQFSPRVNQPP
SNLASIRASESPRPSIHVNPKYLEARRHFDDSTINKNISFERGGSNLKTLGQKHSIEHED
YEYYQGEGTTSHVDSKRLNYTGYGGRSSFPLSTDKLLTPVSGLARPLSPSVEEFSVSSSP
GRVFDRVSPSRPGYNHGRKRGRGEEISDWQKRHHANDSYRGFENVANYGFSNIYEHDRPR
ALIDAYGHDDGQRPLNEKPLGMNGLNVNGVFSKIPETSWQNTEEEEFNWEDMNPTLADGK
TRNATLPPRVVGAMPDISSLSSRHVDPIFRRNGAASNQISGLGNSLKAVEDGKLSRVPRN
EMNHSQGAWKLHANLSVPAAVTGRENINANGGSSSLFDEKPFSANQFSAVPMQLSEVSNV
ISRVASSGSNSLEVRAPSPVVSTVPTVSWSSTTSSPNMLPLPPVHPPQKHPRASFDFRNH
SYSIINQGHQHSETDDKRNLIPVKPAQRPQFSFTPLPHLTQQPPSFQQQLHRPQEPRQNA
VPTVSPLPPQMRLPSASLGYTPVGHGFGSNNIIRNPVSGPHPAMPILNVPNGSVHFHAPM
APLPLVPRPVTQFLPLPQSSGPLTNQPPAAAISGLLNSLVSQGLLKQTPVQDSLGLEFNP
DLLKVRYDSAIKALYDDLPRQCTTCGLRFKTQEEHSKHMDWHVTKNRISKNRKHNPSRKW
FVSVSMWLSGAEALGTDAAPGFLPTESVVEKKDDEEMAVPADEDQNTCALCGEPFEDFYS
DETEEWMYKGAVYLNAPCGSTLGIDRSQLGPIVHAKCRSDTSGAPT
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcgacgccgttccaaagccggctgctccttcgccgattctcgatcgatttcgg
ctccttcttaaggaaagagaagcagattttagggtttctaatggcttcaacgacgtcgtt
tcagttcctccaccatctactgatgagattgtaagattttacgaagatgtcctcgctgaa
ttaacttttaattcgaagccaataatcacagatcttactattattgctggtgaacaaaga
gaacatgctgagggtattgctgatgctatttgtgctagggtattagaggttcctgtagat
caaaagttgccctctttgtatttattggatagcattgtcaagaatattggtcgtgaatat
gctaggcactttgcttctcgtttgccagaggtgttctgtgaggtttatagacaaatccct
ccaaatttgcatacttcaatgcgacatctatttggaacctggtccactgtctttccatca
actgttcttctaaagatagaagatgaattgcagttctccccaagggtaaatcaaccacct
tccaacttagctagcataagggcttcagaatcccctcggccctctatacatgtcaatccc
aaatatttggaagcaagacgacattttgatgattcaacaattaataaaaatatctcattt
gagaggggggggtccaacttaaagacactgggtcagaagcattctattgaacatgaagat
tatgaatattatcaaggagaaggcacaacctctcatgttgattctaaaaggttaaattat
acgggatatggtggccgttcatcttttccattgtcaacagataagttgctcacacctgtg
agtggtctggctcggcctttatcaccttcagttgaagaattttctgtctccagctcacca
ggaagggtgtttgatagagtgtctccatctcgtccaggatataatcatgggcgtaagaga
ggaagaggcgaagaaattagcgactggcagaaaagacatcacgccaacgattcttatcgt
ggttttgaaaatgttgctaactatggttttagcaacatttatgaacatgacaggccaagg
gctttgattgatgcttatggccatgacgatgggcaaaggcctttgaatgagaaacctctg
ggtatgaatggcctgaatgtgaatggtgtatttagtaaaattcctgaaacctcatggcag
aacactgaagaagaagaatttaactgggaagatatgaaccctacattagccgatgggaag
accaggaatgcaactctgccgcccagagttgttggagctatgcctgatattagttctctc
agctccaggcatgttgatcccattttcagaaggaatggggcagcgtctaatcagatatct
gggctagggaattctttaaaagcagttgaagatggtaaattatctcgtgttccaagaaat
gagatgaatcattctcagggagcttggaagttgcatgctaatctttctgtacctgcagct
gttactggcagagaaaatataaatgcaaatggagggtcttcatctttgtttgatgaaaaa
cctttttcagctaatcaattttctgcagtcccaatgcagcttagtgaggtctctaatgtt
atctctagagttgcttcgtcaggttctaactcccttgaagtaagagctccttcgcctgtt
gtgtcaacagttccaactgtctcatggtcttctaccacgagttcacctaatatgctgcct
ttgccacctgtgcatccaccacaaaaacatcctagagcatcttttgattttagaaaccat
agttatagtataatcaatcaaggccatcaacactctgaaactgatgacaaaagaaatttg
attcctgtaaagccggcacagcgccctcagtttagctttactcctttgccccatttaaca
cagcaaccaccatcatttcagcagcaattgcatcggcctcaagagcctcgacagaatgct
gtccctactgtttctcctctaccaccgcagatgagactgccatctgctagccttggatat
acaccagtgggtcatgggtttggctctaataatatcatccgcaatccagtatctggtcct
catcctgctatgcccattttaaatgtgcccaatggttctgtgcacttccatgcacctatg
gcaccactccctctagtccctcgccctgtcactcaatttctaccgcttccacagagttct
ggtccccttactaaccaaccaccggctgctgctatttctggtttacttaattctcttgtt
tcccaaggtttattgaaacaaactcctgtacaggattctcttggattggagtttaacccc
gaccttcttaaagtgcgttatgattcagccataaaggctttgtatgatgatctacccaga
cagtgcaccacatgtggcctgcgtttcaagactcaagaagaacacagtaagcatatggat
tggcacgtgactaagaatcgaatatcaaaaaaccgtaaacacaatccttctcgtaagtgg
tttgtcagtgtgagtatgtggctcagtggtgcggaagcgctggggactgatgcagcgcct
ggatttttgccaactgaaagtgttgttgaaaagaaagatgatgaagagatggcagttcca
gcagatgaggatcagaatacctgtgccttgtgtggagaaccttttgaagatttttatagt
gatgaaactgaagaatggatgtacaaaggagctgtgtacctgaatgcaccttgcgggtca
actttaggtatagacaggtcacagcttggccctattgtgcacgcaaaatgtagatctgat
actagtggtgccccgacctga
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