Amaranthus tricolor (tampala): 130814727
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Entry
130814727 CDS
T09367
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03030
DNA replication
atri03420
Nucleotide excision repair
atri03430
Mismatch repair
atri03440
Homologous recombination
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130814727
03420 Nucleotide excision repair
130814727
03430 Mismatch repair
130814727
03440 Homologous recombination
130814727
03460 Fanconi anemia pathway
130814727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atri03000
]
130814727
03032 DNA replication proteins [BR:
atri03032
]
130814727
03400 DNA repair and recombination proteins [BR:
atri03400
]
130814727
Transcription factors [BR:
atri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130814727
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130814727
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130814727
MMR (mismatch excision repair)
130814727
DSBR (double strand breaks repair)
HR (homologous recombination)
130814727
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
130814727
NCBI-ProteinID:
XP_057536875
LinkDB
All DBs
Position
6:complement(23756661..23760515)
Genome browser
AA seq
625 aa
AA seq
DB search
MPVNLTRNAIAAILDGDINFKPLVQVLDIKLINSKSNQERYRLLLSDGSSSHQAMIAIQL
NHLVKSADVRPGSVIQLIEYICSDVQNRKIIVIINLETIIPECEIIGNPPIPIASESAAG
NVYSNNNAGNIARGINVQVAAASNSYNERNFRPTVQPAYQPPPNYRNHGSVVKNDAPARI
LPINALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVD
RFYDVIEVSKVYMISKGTLKPAQRNFNHLKNEWEIFLESTSTVDLCPDEDVSIPRQQFSF
RPISEIESAENNSILDMIGIVIAVNPSVPILRKNGMETQRRIINLKDMSGRSIELTLWGD
FCNREGQDLQEMFESGYFPVIAVKAAKVNDFSGKSVGTISSTQLFVNPDIPEAHKLTEWF
QRGGKDCAAQSISKDVMPLGGKNERRKTISQIKDEGLGRSEKPDWVTVKATIAFIKTDNF
CYTACPLMIGDRRCNKKVTKSGNARWVCDRCNQEFEECDYRYLLQAQIQDHSGVVWVTAF
QETGEEILGCPANELYKLKSEEQDDRFAEIIRSKIFVPFLFKLKIKEETYGEEQRVKTTV
VRADKIDYVAESRHLLDTITKHRKR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaatctgacgcgaaatgcgattgcagctatacttgatggcgacatcaacttt
aaacctctggttcaggttttggatattaaactcattaattcgaagtctaatcaggaacgt
tatcgtcttctcttatcggatggcagctcgtctcaccaagccatgattgcaattcagctc
aatcatcttgttaagtctgccgatgttcgtccaggttccgttattcaattgattgaatat
atctgtagcgacgtccaaaatcgcaagattattgtcatcatcaacttggaaaccatcata
cctgagtgtgagatcatcgggaatccaccaatacccattgcaagtgaatctgccgcagga
aatgtatattcaaacaataatgctggtaatatagccagaggaatcaatgtacaagtagct
gcagcaagtaatagttacaatgagcgcaatttccgacccactgttcagcctgcataccag
ccacctccaaattatagaaatcatggttctgttgtgaagaatgatgctcctgcacgtata
cttccaattaatgcacttaatccttatcagggacgctgggctatcaaagcaagagtaaca
gctaaaggcgatcttcggcgttataacaatgctaaaggtgatggaaaggtgttttcgttt
gatctccttgattcagatggtggagagattcgcgttacatgctttaatgctgttgttgac
cgcttttatgatgtgattgaggtttcaaaggtttatatgatctcaaagggtaccttaaag
cctgcacagaggaatttcaaccatttgaaaaacgagtgggagatttttctggaatcaact
tctactgttgacctttgcccagatgaagatgtttcgatacccaggcagcagttcagcttc
cgacctatcagcgaaattgagagtgctgaaaacaattccattttagatatgattggtatt
gtaatagcagttaatccttcagttcccatattgaggaagaatgggatggaaacacagaga
aggattataaatctgaaagatatgtctggcagaagcattgagctaaccctatggggtgat
ttctgcaaccgggaaggtcaggacctgcaagagatgtttgagtcagggtactttcctgtc
attgctgtaaaggctgcaaaggtcaatgattttagtgggaaatccgttggtacgatttct
tcaactcagctctttgtcaatcccgatattcccgaagctcacaaattgactgagtggttt
cagcgagggggaaaggattgtgctgctcagtctatctcaaaagatgttatgcctctcggt
ggaaagaatgagagacgcaaaactatttcccagatcaaggatgagggtcttgggaggtct
gagaaaccagactgggttactgtcaaggctactatcgcttttatcaaaacagataatttc
tgttacactgcatgccccttgatgattggagacagacggtgcaataaaaaagtcacaaag
tcgggtaatgcaagatgggtctgtgatcggtgcaatcaagaatttgaagagtgtgattat
cgctacttgcttcaagcacagattcaggatcattcgggagtggtttgggtaaccgcattt
caagaaactggggaagagatcttgggctgtccagctaatgagctgtacaagttaaaatct
gaagagcaagatgacagatttgctgagataattcgtagcaagatctttgttccattcctt
ttcaagctaaaaataaaagaggaaacttatggtgaagagcagagagtaaagacaactgtt
gtgagagcggataaaatagactatgtggctgagagtaggcatttgctggatacaatcaca
aagcaccgtaagcgttga
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