KEGG   Amaranthus tricolor (tampala): 130814728
Entry
130814728         CDS       T09367                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03013  Nucleocytoplasmic transport
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130814728
  09122 Translation
   03013 Nucleocytoplasmic transport
    130814728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130814728
   03041 Spliceosome [BR:atri03041]
    130814728
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     130814728
Spliceosome [BR:atri03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130814728
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR41 WDR55 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_Gbeta WDR90_beta-prop_4th Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_ACSF4 Beta-prop_RIG_2nd Beta-prop_EIPR1 NBCH_WD40 Beta-prop_VPS8 Beta-prop_NOL10_N Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_WDR75_1st
Other DBs
NCBI-GeneID: 130814728
NCBI-ProteinID: XP_057536876
LinkDB
Position
6
AA seq 372 aa
MVMDVTNWDEEAYRNSILHERESQSQTVFRAIFAPSSLSNPNPEIVVTASSDGSLATYSL
SSLLSSLEMRHGISSPQQVLAAEPNCFLQAHEGPAYDVKFYGDDADALLLSCGDDGRIRG
WKWMELEASETPIHEQGSHVRPVIDLMNPQHRGPWCAMSPISENNAIAVDYQGGSIYAAA
GDSSAYCWDVETCKIRMMFKGHSDYLHCIVARKSSNQIITGSEDGTARIWDCRSGKCTQV
ISPDRNMSLKEISCVSCIAIDASESWLACGSGQNLFVWNLLASEQITRINTPMICQDVVF
DDNHILAVGASPMLSRMDMNGKILSQIRCAPESAFSVSLHQSGVIAVAGYAGMVDFVSQF
GSHLCSFQCTSV
NT seq 1119 nt   +upstreamnt  +downstreamnt
atggtgatggacgtcacaaactgggatgaagaagcttacagaaactccatccttcatgaa
agagaatctcaatctcaaaccgtttttcgcgccatttttgctccttcatccctttcaaac
cctaaccctgaaattgtcgttactgcttccagtgatggttccctcgccacctactcactc
tcttctctactctcttcccttgaaatgcgtcatggcatttcgagtcctcaacaagtgctt
gctgctgaacccaattgttttcttcaagcgcacgaaggacctgcttatgatgttaaattt
tatggcgatgatgctgatgctttgttactcagctgtggagatgatggtcggatacgaggt
tggaaatggatggaacttgaagcctctgagacaccgatacatgaacaaggctcccatgta
agaccagtaattgacttgatgaatccacaacacaggggtccatggtgtgctatgtctcca
atttctgagaacaatgcaattgctgttgactaccagggaggatccatatatgctgctgct
ggtgattcttccgcatattgttgggacgtggagacatgtaagattaggatgatgtttaaa
ggacattcagattatttgcattgcattgttgctcgtaagagtagcaatcagatcataact
ggttcagaggacggcacagcaagaatatgggattgccgaagtgggaagtgcactcaggtt
atatctcctgaccgaaatatgagtctaaaggaaatatcgtgtgttagctgcattgctatc
gatgctagtgagagttggctggcttgtggcagtggacaaaatttatttgtgtggaatctt
cttgcttcagaacaaattacaaggatcaatactcctatgatttgccaagatgtagtattt
gatgacaatcatattttagcagttggagcctcacccatgcttagtcgtatggatatgaat
ggcaagattctatctcagataagatgtgctcctgaatctgccttttctgtctccttacat
caatcgggtgttatagcagtcgctggttatgcaggaatggttgattttgtatcgcagttt
ggtagtcatttgtgctcatttcaatgcacgtctgtatga

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