Amaranthus tricolor (tampala): 130814936
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Entry
130814936 CDS
T09367
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130814936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130814936
03041 Spliceosome [BR:
atri03041
]
130814936
03036 Chromosome and associated proteins [BR:
atri03036
]
130814936
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130814936
Spliceosome [BR:
atri03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130814936
Complex B
130814936
Complex C
U2 SnRNP specific factors
130814936
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130814936
TFTC complex
130814936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
130814936
NCBI-ProteinID:
XP_057537206
LinkDB
All DBs
Position
6:27676655..27683981
Genome browser
AA seq
1209 aa
AA seq
DB search
MYLYSLTLQKPTGIICAINGNFSGGKVQEIVVARGKVLDLLRPDDSGKIQTLLSVDIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITYSICGVDCGFDNPI
FAAIEMDYSEADQDSTGQAAAEAQKHLTFYELDLGLNHVSRKWSEPVDNGANILVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRALIPRRTDLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNEGVTELKIKYFDTIPVSSSMCVLKSGFLFASSEFGNHALYQFQAI
GDEPDVESSSARMMELETEEGFQPVFFQPRKLKNLLRVDQVQSLMPIMDMKVANLFEEET
PQIFTLCGQGPRSSLRILRPGLGITEMATSPLPGVPNAVWTVKKNVNDEFDAYIVVSFAS
VTLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPG
KRTIVKVGYNRLQVVIALSGGELIYFEVDINGQLMEVEKHEMPGDVACLDIAPVPEGRQR
SRFLAVGSYDNTIRILSLDPDDCMQVLSLQSVFSPPESLLFLEIQASSGGEDGADHPASL
FLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGY
IYQGHFLLTPLTCGTLEFAASFSSDQCAEGVVAVAAEALKVFTIERLGEAFNETSIPLRY
TPRKFVLQPKRKFLVMIESDNRALTAEEREAAQKECFGIGVDENGNIEMENGDEDEDNQL
SDEQYGYPKAEKEKWVSCIRVLDPRTEETTCCLELQDNEAAFSICTVNFHDKDYGTLLAV
GTAKSLQFFPKRSFEAAYIHIYRFVDGGRLELLHKTQVDGVPLALAQFQGRLLAGIGPVL
RLYDLGKRKLLRKCENKLFPNTIITIHTYRDRIYVGDIQESFHYCKYRRDENQLYIFADD
VYPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPN
KVEEIVQFHVGDVVSSLQKASLIPGGGECIIYGTVMGSVGAFLPFTSRDDVDFFSHLEMH
LRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPAEILKK
LEEIRNKII
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagcttaactcttcaaaaacctaccggtataatttgtgccatcaatgga
aacttctccggaggtaaagttcaggaaattgtcgttgctagaggtaaagttcttgatctt
cttcgacccgacgacagtggtaagatccaaaccctactttctgttgatattttcggtgct
atccgttctttagctcaatttaggcttactggttctcaaaaggattacattgttgttggt
tccgattcgggtcgaattgttatcctagaatataataaagagaagaatgtatttgataaa
gtgcaccaggaaacgtttgggaagtcgggttgtcgtcgaattgttccgggtcagtacttg
gctattgatccaaaagggagggctgttatgattggggcttgtgaaaagcagaaacttgtt
tatgtcttaaatagggataccgctgctaggttaactatttcctcgcctctagaggcgcat
aagtcgcatacgataacgtactcaatttgtggagttgattgtgggtttgataatcctata
tttgctgctattgagatggattactccgaggctgatcaggattctactggtcaagctgcg
gctgaggcgcagaaacatttgacattttatgagctcgatttgggtcttaatcatgtgtct
aggaagtggtcagaacctgtggataatggtgctaatatacttgttacagtgcctggtggg
ggggatgggcctagtggtgttttggtgtgtgctgaaaattttgtgatttataaaaatcaa
gggcatcctgatgtgcgggctttaattcctaggagaactgatttgccggctgagcgtggg
gttttgatagtgtctgcagcaactcataagcagaaatcaatgtttttctttttgcttcag
acggagtatggtgatatatttaaggttactctagaacatggcaacgagggtgttacagaa
ttgaagataaagtattttgatacaattccggtatcatcttcaatgtgtgtgttgaagtct
ggtttcttgtttgcgtcgtctgagtttggtaatcatgcattgtatcagttccaagctatt
ggagatgaaccagatgtagagtcctcctctgctagaatgatggaactagaaactgaggaa
ggtttccagcctgtgtttttccaaccaaggaagcttaaaaatcttcttagagttgaccaa
gttcagagtttgatgccaataatggacatgaaagtggctaatctttttgaggaagagaca
ccacagatttttactctttgtggtcaaggtcctcgttcatctttaaggatactaaggcct
ggtttgggaatcaccgagatggctacctctccacttcctggtgtgcctaacgctgtttgg
acagtgaaaaagaatgtcaatgatgaatttgatgcttatatcgtggtctcgtttgctagt
gtcactcttgtactctcaattggtgagacagttgaagaagttagtgatagtgggtttttg
gataccactccttctcttgctgtatctctaattggcgatgactctcttatgcaagtgcac
cctagtggtatcagacatattagggaagatggtcgtatcaatgagtggagaacccctgga
aagagaactattgttaaggttgggtacaataggcttcaagttgtcattgcactcagtggg
ggagagcttatttactttgaggtggatataaatggtcagttaatggaagtggagaagcat
gagatgccgggagatgtggcttgtttggacattgccccagttccagaaggtagacaaaga
tctcgtttccttgcagttggatcttacgataatactatccgtattttgtctctggatcca
gatgactgtatgcaagtgctgagcttacaaagtgtgttctcaccccctgagtccttgctg
tttcttgagattcaggcatcttcaggaggtgaggacggtgctgatcatcctgctagtctt
ttcttaaatgctggtctgcagaatggtgtcctgtttaggacagttgtggacatggtaact
ggtcagctttctgattcccgttctcgatttttaggactaagagctcccaaactgttttca
attattgtacgaggtcggcgtgccatgctttgcttgtcaagtcgcccttggcttgggtac
atatatcagggccatttccttttaacaccccttacatgtggcacacttgaattcgcggcc
tcattttcatctgatcagtgtgcagaaggtgtagtcgctgttgccgcggaggcactaaag
gttttcactattgagaggctgggtgaggcttttaatgaaacttcaattccgttaaggtac
actccacgaaaatttgtgcttcagcctaagcggaagtttctggtgatgatcgagagtgat
aaccgagcattaactgcagaagagagggaggctgcgcagaaggaatgctttggtattggg
gtggatgagaatggtaatattgagatggaaaatggcgatgaagatgaagataaccagctc
tctgatgagcaatatgggtatcctaaagcagagaaagagaaatgggtttcttgcattcgg
gttcttgaccccagaacagaggaaactacttgttgtcttgagcttcaggataatgaggct
gcattcagcatctgtactgtgaatttccatgataaggattatgggactctattagctgtt
ggtactgcaaagtcccttcagtttttccctaaaagatcgttcgaggcagcatatattcac
atttatcgttttgttgatggtggaagacttgagcttttgcacaagacccaagtagatgga
gttccactggctttagcccagtttcaagggagattacttgctggaataggacctgtgctc
aggctttatgatttgggcaagaggaaattgctcagaaaatgtgagaataagctgtttcct
aacacaattatcaccatacacacttaccgtgatcgtatatatgtgggtgacatccaagag
tcattccattattgcaagtatagacgggatgagaatcagctatacatatttgctgatgat
gtttatccgagatggttaactgcatcacaccatgtagattttgatacaatggctggtgcc
gataaatttggaaatgtgtattttgttcggctacctcaggatgtttcggatgagattgaa
gaggacccaacaggtgggaaaattaaatgggagcagggtaaactaaatggtgctcctaac
aaggttgaggagattgttcagtttcatgttggtgatgttgtatctagtttgcagaaggcg
tctctcatacctggtggtggagaatgtatcatatatggaactgtaatggggagcgtaggg
gcatttcttccttttacctcccgtgatgatgttgactttttttctcatctggaaatgcat
ttgagacaggagcacccacctctgtgtggcagagatcatatggcctatagatctgcatat
tttcctgttaaggatgtgattgatggcgatctttgtgaacagtttccaacactgccaatg
gacatgcagaggaagattgctgatgaattggacagaaccccagcagagattctaaagaaa
ctggaagaaatccgaaataagattatctga
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integrated database retrieval system
