KEGG   Amaranthus tricolor (tampala): 130814937
Entry
130814937         CDS       T09367                                 
Name
(RefSeq) sm-like protein LSM1B isoform X1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130814937
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130814937
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130814937
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130814937
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 130814937
NCBI-ProteinID: XP_057537207
LinkDB
Position
6:21784906..21788311
AA seq 130 aa
MILLDCSCSLELSSHLVLSQNFCAEKILVLAMDGRKLLGTLRSFDRHGNIVLEGAYDRVI
VDNLYCDNYLGLLVIRGYSLALLGDLAIRELPPFMTRVSEVEIKEAQKAKGVAGDLKKKT
RDRMNFLDFD
NT seq 393 nt   +upstreamnt  +downstreamnt
atgattttactcgattgtagttgttccctagagctatctagtcatttagttttatctcaa
aatttttgtgcagaaaagattcttgtcttggcgatggatggtagaaagctattagggaca
ttgcgttcctttgatcgtcatgggaatattgttcttgaaggtgcctatgatagagtaatt
gttgataatttgtactgtgataactacttgggtttacttgttatcagaggatatagttta
gcgttgttaggagatctggccataagggagcttcctccatttatgacgcgagtgtcagaa
gtagaaataaaagaggctcaaaaggcaaaaggagtagctggtgatctgaaaaaaaaaaca
agagatcgaatgaatttccttgattttgattga

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