Amaranthus tricolor (tampala): 130814937
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Entry
130814937 CDS
T09367
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130814937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130814937
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130814937
mRNA degradation factors
5'-3' decay
Lsm complex
130814937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
130814937
NCBI-ProteinID:
XP_057537207
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Position
6:21784906..21788311
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AA seq
130 aa
AA seq
DB search
MILLDCSCSLELSSHLVLSQNFCAEKILVLAMDGRKLLGTLRSFDRHGNIVLEGAYDRVI
VDNLYCDNYLGLLVIRGYSLALLGDLAIRELPPFMTRVSEVEIKEAQKAKGVAGDLKKKT
RDRMNFLDFD
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgattttactcgattgtagttgttccctagagctatctagtcatttagttttatctcaa
aatttttgtgcagaaaagattcttgtcttggcgatggatggtagaaagctattagggaca
ttgcgttcctttgatcgtcatgggaatattgttcttgaaggtgcctatgatagagtaatt
gttgataatttgtactgtgataactacttgggtttacttgttatcagaggatatagttta
gcgttgttaggagatctggccataagggagcttcctccatttatgacgcgagtgtcagaa
gtagaaataaaagaggctcaaaaggcaaaaggagtagctggtgatctgaaaaaaaaaaca
agagatcgaatgaatttccttgattttgattga
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