Amaranthus tricolor (tampala): 130815019
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Entry
130815019 CDS
T09367
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
130815019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130815019
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130815019
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
130815019
NCBI-ProteinID:
XP_057537331
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Position
6:30201571..30208771
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AA seq
584 aa
AA seq
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MCSKKSKHSSNSETLQKISSFPDEVLEKVLGFLESHKDRSSVSLVCKDWYNAERWSRTHI
FIGNCYAVTPEIVARRFPKIRSVILKGKPRFSDFNLVPEDWGAYIHPWLLFFAKVYPFLE
ELRLKRMRVSDESLEFLSLSFPNFKRISLLSCDGFSTDGLAAIASNCKNLVEFDIQENGI
EDRNGDWLCGFPESFTSLEILNFSNIHTKVCFPSLEKLVARCKSLRVLKVNKNVDLEQLQ
RLLVKAPHLTQLGTGSFSQELQPSQFASLESIFNNNCNLQTVSGLWEVNPVYLPVLYPAC
AGLTFLNLSDAALQCDELAQLLVHCPNLRRLWVLDTVGDEGLEAVGSSCPLLEELRVFPA
SPFEDADIAHGVTETGFVALSYGCPKLHYVLYFCRQMTNEAVATIVRNCPDFTHFRLCIM
NPGQPDHLTNEPMDEAFGSVVKSCKKLRRLAVSGLLTDLTFEYIGKYAKNLETLSVAFAG
SSDLGMKCVLAGCPKLRRLEIRDCPFGNSALLSGLEKYESMRSLWMSACNVTMSACKLLA
KEMPRLNVEVIKDEDTDDCQANKVYVYRTVAGPRKDAPPFVVTL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtgttcaaaaaagagcaaacattcatcaaattctgaaactttgcaaaagatttcctca
tttccagatgaagtattggagaaagttttaggctttcttgaatcccataaagatagaagt
tcagtgtcattagtttgtaaggattggtataatgctgaaagatggagtagaactcatata
tttattggtaattgttatgctgttacacctgaaattgttgctagaagatttccaaagata
agaagtgttatcttgaaaggaaaacctagattttcagatttcaatttggttcctgaagat
tggggtgcttatattcatccttggcttcttttctttgctaaagtttacccctttttggag
gaattacgattaaaaaggatgagggttagtgatgaaagtttggaatttttgtctttgtct
ttccctaatttcaagaggatttctttgctaagctgtgatgggttcagtactgatggtctt
gctgctattgcctctaattgcaagaacttagttgagttcgacattcaggaaaatggaatt
gaggatcgcaatggtgactggttgtgtggctttcctgaaagtttcacatcattggagatt
cttaacttctccaatattcataccaaagtctgctttccttctctcgagaaactggtagcc
aggtgcaaatctttacgtgttttgaaggtgaacaaaaatgtagacttggagcaattgcag
agattgcttgtaaaagctcctcacctgacacaactaggcacagggtccttctcacaggag
ctccagccttcccaatttgcgagtcttgagagtatttttaacaacaattgcaatctacaa
accgtttcgggtttatgggaagtcaatccggtatatttgcctgttctttatccagcttgc
gcagggctgacatttttgaatcttagcgatgcagctttgcaatgtgatgagcttgctcag
cttcttgtgcactgcccgaatcttcggcgtctttgggtgttggacactgttggggatgaa
ggtctggaagctgttggatccagctgccctttgcttgaagaactccgggtatttcctgca
agcccgtttgaagatgctgatattgcacacggggttaccgagactggttttgttgcattg
tcctatggatgccctaagctccattatgtcctttacttctgccgccaaatgacaaatgaa
gctgtcgcaaccatcgtgcgaaactgccctgattttactcatttccgcctctgtataatg
aatcctggtcaacctgatcatttgacaaatgaaccaatggatgaggcttttggctcggtc
gtaaaatcttgtaagaaactcagaagacttgccgtttctggtttattgaccgacctaact
tttgaatatatcgggaaatatgccaagaatttggagacactttctgtggcttttgccgga
agtagtgacttaggtatgaaatgtgttctggctggttgtcctaaactgaggcggctggaa
ataagggattgcccctttggtaattctgctcttctgtcaggattggagaaatacgaatct
atgagatctctctggatgtcggcttgtaatgtcacgatgagtgcttgtaaactgttggca
aaggaaatgcctaggctgaatgttgaggtcataaaggacgaggataccgatgactgccag
gcgaataaagtttatgtctaccgtactgttgctggacctagaaaggacgcccctcctttt
gttgtcacgctttga
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