Amaranthus tricolor (tampala): 130815064
Help
Entry
130815064 CDS
T09367
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
atri03015
mRNA surveillance pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130815064
09122 Translation
03013 Nucleocytoplasmic transport
130815064
03015 mRNA surveillance pathway
130815064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130815064
03041 Spliceosome [BR:
atri03041
]
130815064
03009 Ribosome biogenesis [BR:
atri03009
]
130815064
03012 Translation factors [BR:
atri03012
]
130815064
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130815064
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130815064
mRNA cycle factors
Stress granule specific factors
130815064
Spliceosome [BR:
atri03041
]
Complex C
Other components
EJC/TREX
130815064
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
90S particles
Helicases
130815064
Translation factors [BR:
atri03012
]
Eukaryotic type
Initiation factors
eIF-4
130815064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
CMS1
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
130815064
NCBI-ProteinID:
XP_057537384
LinkDB
All DBs
Position
6:complement(21424065..21433316)
Genome browser
AA seq
407 aa
AA seq
DB search
MASGSVIPANRGRRNMNDDDKLQFEATEGIEPVNSFDRMGIKDDLLRGIYAYGFEKPSAI
QQRAVMPIIQGRDVIAQAQSGTGKTSMISLAVCQMVDTSTREVQALILSPTRELASQTEK
VIMAIGLHMNIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRNIKLL
ILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITNKFMTDPVKILVKRD
ELTLEGIKQFFVAVEQEDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTV
SSMHGDMPQKERDAIMKEFRDGDTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgggtcggttattccggcaaatagaggaagaagaaatatgaacgacgacgac
aaacttcagtttgaggctactgaaggtatcgaacctgttaacagtttcgatagaatgggg
attaaagatgaccttttgcgtgggatctatgcttatggttttgagaaaccttctgctatt
caacaacgtgctgttatgcctattattcaaggtcgcgatgttattgcgcaggctcagtct
ggtactgggaaaacttctatgatttccttggctgtttgtcagatggttgatacctctact
cgcgaggttcaagcattaatcttatcacctacacgagagttggcttctcaaacagaaaaa
gttattatggccatcggtttacacatgaatatacaagctcatgcatgcattggagggaaa
agtgtaggtgaggatattaggaaattagagtatggagttcatgtggtttcaggaacccca
ggtagagtttgtgacatgatcaagaggagaacacttagaacccgaaatatcaaactttta
attcttgatgagtctgatgagatgttgagcaggggttttaaggaccagatttatgatgtc
tatcgttaccttccaccagagcttcaggttgtgctgatctcggccaccctccccaatgaa
atactggaaatcaccaataagttcatgacagatcctgttaaaatccttgtaaagcgtgat
gagttgactttagagggcatcaagcaattctttgttgcagttgagcaggaagattggaag
tttgatactctttgtgatctttatgatacccttacaattactcaagctgttatcttttgc
aacactaagcgcaaggtggattggctcactgaaaaaatgcgaaacaataacttcactgtt
tcatccatgcatggtgatatgcctcagaaagaacgagatgctattatgaaggagtttcgt
gatggggatactcgtgttctgataacgacagatgtttgggctcgtgggattgatgtccaa
caggtttctttggttatcaactatgatttgcccaataatcgagaactttatatccaccgg
ataggtcgatctggtcgttttggacgcaagggtgttgcgatcaactttgtcaagaaggac
gatatcagaattttaagagatatcgagcaatattacagtacccaaattgatgagatgccg
atgaatgttgctgatttgatatga
DBGET
integrated database retrieval system
